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Genome Project of Streptomyces avermitilis_AverGenome

Last updated : 2nd. Mar. 2018. Your visit is 539544. Is an industrial microorganism. Produced anthelmintic macrolide Avermectins. If you have any comments against the annotation, please send us them. (mailto: info-genome@ls.kitasato-u.ac.jp. The valuable comments will be feed back to the updated annotation. General features of the genome. 9,025,608 bp. 60 (47 ECF subfamily) tree. Proc Natl. Acad. Sci. USA. Biochem Biophys Res Commun.

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Genome Project of Streptomyces avermitilis_AverGenome | ls.kitasato-u.ac.jp Reviews
<META>
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Last updated : 2nd. Mar. 2018. Your visit is 539544. Is an industrial microorganism. Produced anthelmintic macrolide Avermectins. If you have any comments against the annotation, please send us them. (mailto: info-genome@ls.kitasato-u.ac.jp. The valuable comments will be feed back to the updated annotation. General features of the genome. 9,025,608 bp. 60 (47 ECF subfamily) tree. Proc Natl. Acad. Sci. USA. Biochem Biophys Res Commun.
<META>
KEYWORDS
1 times
2 streptomyces avermitilis
3 what's new
4 about this project
5 browse genome
6 physical map
7 ordering cosmid clones
8 secondary metabolites
9 blast
10 secure
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PAGE
times,streptomyces avermitilis,what's new,about this project,browse genome,physical map,ordering cosmid clones,secondary metabolites,blast,secure,fasta,cytochrome p450 genes,strain specific genes,accession numbers,download the sequences,conserved genes
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Genome Project of Streptomyces avermitilis_AverGenome | ls.kitasato-u.ac.jp Reviews

https://ls.kitasato-u.ac.jp

Last updated : 2nd. Mar. 2018. Your visit is 539544. Is an industrial microorganism. Produced anthelmintic macrolide Avermectins. If you have any comments against the annotation, please send us them. (mailto: info-genome@ls.kitasato-u.ac.jp. The valuable comments will be feed back to the updated annotation. General features of the genome. 9,025,608 bp. 60 (47 ECF subfamily) tree. Proc Natl. Acad. Sci. USA. Biochem Biophys Res Commun.

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avermitilis.ls.kitasato-u.ac.jp avermitilis.ls.kitasato-u.ac.jp

Genome Project of Streptomyces avermitilis_AverGenome

Last updated : 2nd. Mar. 2018. Your visit is 537737. Is an industrial microorganism. Produced anthelmintic macrolide Avermectins. If you have any comments against the annotation, please send us them. (mailto: info-genome@ls.kitasato-u.ac.jp. The valuable comments will be feed back to the updated annotation. General features of the genome. 9,025,608 bp. 60 (47 ECF subfamily) tree. Proc Natl. Acad. Sci. USA. Biochem Biophys Res Commun.

INTERNAL PAGES

ls.kitasato-u.ac.jp ls.kitasato-u.ac.jp
1

List of conserved genes

http://www.ls.kitasato-u.ac.jp/conserved

List of conserved genes between S. avermitilis. Since these html files contain Table-format, downloading will be long. Pair-wise list SCO- SAV. The data was obtained by reciprocal best hit).

2

Secondary metabolite

http://www.ls.kitasato-u.ac.jp/metabolite

Distribution of 37 secondary metabolite clusters in S. avermitilis. Ver090901). ref: Nat. Prod. Rep. 26.

3

BLAST Web Interface

http://www.ls.kitasato-u.ac.jp/blast_local/index.html

BLAST Web Interface for Actinomycetales. Your visit is 40008. S coelicolor A3(2) (Protein). S griseus IFO13350 (Protein). S lividans 1326 (Protein). S lividans TK24 (Protein). S albus J1074 (Protein). S scabies 87.22 (Protein). S bingchenggensis BCW-1 (Protein). S clavuligerus ATCC 27064 (Protein). S cattleya NRRL 8057 (Protein). S venezuelae ATCC 10712 (Protein). S violaceusniger Tu 4113 (Protein). Streptomyces sp. SirexAA-E (Protein). S flavogriseus ATCC 33331 (Protein). S collinus Tu365 (Protein).

4

Ribosomal RNA operons of S. avermitilis

http://www.ls.kitasato-u.ac.jp/rrn.html

Lists of ribosomal RNA operons in Streptomyces avermitilis. All 16S rDNA sequences are completely same.

5

Ordering Cosmid

http://www.ls.kitasato-u.ac.jp/cosmid/index.cgi

Ordering cosmid clones that covered with S. avermitilis. Linear chromosome except that a few kb of both ends. The genome sequence of S. avermitilis. Map of ordering cosmid clones in S. avermitilis. BLAST search in Ordering Cosmid Library. Information of cosmid vectors. Two cosmid vectors, Lorist6. Were used for the construction of genomic library of Streptomyces avermitilis.

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