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Mailund on the Internet – Computer science, bioinformatics, genetics, and everything in betweenComputer science, bioinformatics, genetics, and everything in between
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Mailund on the Internet – Computer science, bioinformatics, genetics, and everything in between | mailund.dk Reviews
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Computer science, bioinformatics, genetics, and everything in between
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Paper reviews | Mailund on the Internet
http://www.mailund.dk/index.php/category/work/paper-reviews
Mailund on the Internet. Computer science, bioinformatics, genetics, and everything in between. Category Archives: Paper reviews. Reviews of papers I’m reading. An early modern human from Romania with a recent Neanderthal ancestor. New interesting paper out: An early modern human from Romania with a recent Neanderthal ancestor. I actually heard about this back in May in Cold Spring Harbor, but it is great to be able to actually read the paper. This individual and I guess this admixture event didn’t leave...
An early modern human from Romania with a recent Neanderthal ancestor | Mailund on the Internet
http://www.mailund.dk/index.php/2015/06/22/an-early-modern-human-from-romania-with-a-recent-neanderthal-ancestor-3
Mailund on the Internet. Computer science, bioinformatics, genetics, and everything in between. An early modern human from Romania with a recent Neanderthal ancestor. New interesting paper out: An early modern human from Romania with a recent Neanderthal ancestor. I actually heard about this back in May in Cold Spring Harbor, but it is great to be able to actually read the paper. So there was the admixture event ancestral to all Eurasians, another into Asians, and now a third admixture event. There is a ...
Thomas Mailund | Mailund on the Internet
http://www.mailund.dk/index.php/author/admin
Mailund on the Internet. Computer science, bioinformatics, genetics, and everything in between. Author Archives: Thomas Mailund. My name is Thomas Mailund and I am a research associate professor at the Bioinformatics Research Center, Uni Aarhus. Before this I did a postdoc at the Dept of Statistics, Uni Oxford, and got my PhD from the Dept of Computer Science, Uni Aarhus. Almost done revising Introduction to Data Science. This entry was posted in Writing. August 24, 2016. August 23, 2016. What I implemen...
PubChase and Papers | Mailund on the Internet
http://www.mailund.dk/index.php/2015/06/24/pubchase-and-papers
Mailund on the Internet. Computer science, bioinformatics, genetics, and everything in between. I wanted to try out pubchase. Since it sounds like a great way of getting updates on papers I would want to read. I have uploaded my Mendeley. Library there, but it will take a few days before it can give me recommendations, apparently. I look forward to seeing how it works. I have been pretty happy with how ReadCube performs at finding recommendations, but while I love the Enhanced PDF feature in ReadCube.
Mailund on the Internet | Computer science, bioinformatics, genetics, and everything in between | Page 2
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Mailund on the Internet. Computer science, bioinformatics, genetics, and everything in between. IA Writer problems resolved. It turned out that the problem. Indexing. I had emptied the library to test this but didn’t see a change. Now I noticed that on my laptop I have added Dropbox to the library, which I have not at work, and it is probably trying to index all files there. My Dropbox folder is. So that explains it. Removing Dropbox from iA Writer’s library solved the problem. August 18, 2016. I am thin...
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evolving all we are: SysCall - Distinguishing heterozygous sites from systematic errors
http://maojf.blogspot.com/2013/11/syscall-distinguishing-heterozygous.html
Evolving all we are. SysCall - Distinguishing heterozygous sites from systematic errors. Http:/ bio.math.berkeley.edu/SysCall/. SysCall is a logistic regression based classifier. Given a list of candidate heterozygous genomic locations and a sam file of sequenced reads SysCall classifies each genomic location as either a heterozygous site or a systematic error and outputs according lists, along with the assigned posterior probabilities. The submitted manuscript describing SysCall can be found here. On th...
evolving all we are: De Novo Transcriptome Assembly with Trinity: Protocol and Videos
http://maojf.blogspot.com/2013/11/de-novo-transcriptome-assembly-with.html
Evolving all we are. De Novo Transcriptome Assembly with Trinity: Protocol and Videos. Http:/ gettinggeneticsdone.blogspot.com/2013/10/de-novo-transcriptome-assembly-trinity.html. 订阅： 帖子评论 (Atom). List of Bioinformatics Workshops and Training Reso. A Mitochondrial Manhattan Plot. SysCall - Distinguishing heterozygous sites from s. PubMed Commons: One post-publication peer review f. Useful Unix/Linux One-Liners for Bioinformatics. De Novo Transcriptome Assembly with Trinity: Proto. Beware of the snail.
Popgen ramblings: December 2008
http://popgen-ramblings.blogspot.com/2008_12_01_archive.html
Wednesday, December 10, 2008. Natural variation in Nature. Nature has a whole slew of reviews on the current progress and prospects of mapping the genetic determinants of phenotypic variation:. Association mapping in humans ( here. Mapping behavioral traits in mouse ( here. Genetic variation in malaria ( here. Mapping in plants ( here. And how we should use natural variation to learn about biological systems ( here. Quite a fun reading list. Posted by Graham Coop. Saturday, December 6, 2008.
Popgen ramblings: April 2008
http://popgen-ramblings.blogspot.com/2008_04_01_archive.html
Friday, April 25, 2008. Would a gene by any other name smell as sweet? I was thinking about blogging about the paper on metal tolerance evolution in Arabidopsis halleri via a cis-regulatory change ( Hanikenne et al. But I see that gnxp has already done so here. So I thought in the vein of the 'cis-regulatory vs protein' evolution debate, I would point people towards a recent paper ( Scalliet et al. See the commentary on this paper by Coyne and Hoekstra. Hanikenne et al. Nature 2008. Diet and the evolutio...
Popgen ramblings: A gut feeling about history
http://popgen-ramblings.blogspot.com/2009/01/gut-feeling-about-history.html
Friday, January 23, 2009. A gut feeling about history. A interesting article in Science. On using the (mainly vertically transmitted) human pathogen bacteria Helicobacter pylori to reconstruct the peopling of the Pacific. Which I guess is a finer-scale followup to a previous paper. Doing this for worldwide populations. Posted by Graham Coop. November 8, 2009 at 5:13 AM. October 15, 2010 at 1:34 AM. Subscribe to: Post Comments (Atom). Mailund on the internet. Sex, genes and evolution. The tree of Life.
Popgen ramblings: Chakravarti on race and kinship
http://popgen-ramblings.blogspot.com/2009/01/chakravarti-on-race-and-kinship.html
Wednesday, January 21, 2009. Chakravarti on race and kinship. There's an interesting opinion piece at Nature. Posted by Graham Coop. November 8, 2009 at 5:13 AM. October 15, 2010 at 1:34 AM. Subscribe to: Post Comments (Atom). Mailund on the internet. Sex, genes and evolution. The tree of Life. This week in evolution. CNV and HIV susceptibility. A gut feeling about history. Chakravarti on race and kinship. Common disease common variant.
Popgen ramblings: September 2007
http://popgen-ramblings.blogspot.com/2007_09_01_archive.html
Thursday, September 20, 2007. Association studies of classic traits. I guess the only problem with this idea (apart from the ethical committees and the like) is that it would give kids and parents the wrong idea about how simple and deterministic genetic variation is. Posted by Graham Coop. Posted by Graham Coop. Subscribe to: Posts (Atom). Mailund on the internet. Sex, genes and evolution. The tree of Life. This week in evolution. Association studies of classic traits. Common disease common variant.
evolving all we are: PubMed Commons: One post-publication peer review forum to rule them all?
http://maojf.blogspot.com/2013/11/pubmed-commons-one-post-publication.html
Evolving all we are. PubMed Commons: One post-publication peer review forum to rule them all? Http:/ gettinggeneticsdone.blogspot.com/2013/10/pubmed-commons-post-publication-peer-review.html. 订阅： 帖子评论 (Atom). List of Bioinformatics Workshops and Training Reso. A Mitochondrial Manhattan Plot. SysCall - Distinguishing heterozygous sites from s. PubMed Commons: One post-publication peer review f. Useful Unix/Linux One-Liners for Bioinformatics. De Novo Transcriptome Assembly with Trinity: Proto. A massive h...
evolving all we are: 2013年龙星计划之生物信息学
http://maojf.blogspot.com/2013/09/2013.html
Evolving all we are. Day 1 Background. Basic Statistics. Introduce deep sequencing data. Motivational examples. Day 2 Analyze RNA-seq data and small RNA-seq data. Day 3 DNA methylation, Integration with other data types. Day 4 Analyze ChIP-seq data on transcription factors and histone modifications. Integration with other sequencing data types. Day 5 Analyze DNase-seq data and MNase-seq data. Integration with other data types. Day 3 Analyze RNA-seq data and small RNA-seq data. 订阅： 帖子评论 (Atom). Image: D3 ...
evolving all we are: BroadE Workshop 2013 July 9-10
http://maojf.blogspot.com/2013/09/broade-workshop-2013-july-9-10.html
Evolving all we are. BroadE Workshop 2013 July 9-10. Http:/ www.broadinstitute.org/gatk/guide/events? This workshop covered the core steps involved in calling variants with the Broad’s Genome Analysis Toolkit, using the “Best Practices” developed by the GATK team. View the. To learn why each step is essential to the calling process, what are the key operations performed on the data at each step, and how to use the GATK tools to get the most accurate and reliable results out of your dataset. A Tale about ...
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Mailund on the Internet – Computer science, bioinformatics, genetics, and everything in between
Mailund on the Internet. Computer science, bioinformatics, genetics, and everything in between. Who we are and how we got here. If you are, at all, interestd in human pre-history, then you should read this book. David Reich,. Who we are and how we got here. Full disclosure, David is a friend of mine and I did a sabbatical in his lab a few years ago, but I am not just recommending it because of that — or because I’m mentioned in it, which I am :) — no, it really is amazingly good). March 29, 2018. Lots of...
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