maizecdna.org

Maize Full Length cDNA Project

Arizona Genomics Computational Laboratory. This project has been funded by NSF award # 0501857. PIs: Y. Yu, C. Soderlund, V. Walbot). 364,385 ESTs submitted to GenBank. 27,455 FLcDNAs submitted to GenBank. Queries based on contig (UniTrans), UniProt or GO. 27k FLcDNAs (from this project). 76k GenBank FLIcDNAs plus 7k unfinished (from this project). 797k maize ESTs from GenBank segregated by library. FLcDNA Tutorial, Why FLcDNA, Transgenic Plants. Approach, Glossary, Resources. Last Modified: 10 Dec 2009.

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Maize Full Length cDNA Project | maizecdna.org Reviews

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Arizona Genomics Computational Laboratory. This project has been funded by NSF award # 0501857. PIs: Y. Yu, C. Soderlund, V. Walbot). 364,385 ESTs submitted to GenBank. 27,455 FLcDNAs submitted to GenBank. Queries based on contig (UniTrans), UniProt or GO. 27k FLcDNAs (from this project). 76k GenBank FLIcDNAs plus 7k unfinished (from this project). 797k maize ESTs from GenBank segregated by library. FLcDNA Tutorial, Why FLcDNA, Transgenic Plants. Approach, Glossary, Resources. Last Modified: 10 Dec 2009.

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1 about project

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3 order and download

4 outreach tutorial

5 arizona genomics institiute

6 stanford university

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10 pave assemblies

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Maize Full Length cDNA Project | maizecdna.org Reviews

https://maizecdna.org

Arizona Genomics Computational Laboratory. This project has been funded by NSF award # 0501857. PIs: Y. Yu, C. Soderlund, V. Walbot). 364,385 ESTs submitted to GenBank. 27,455 FLcDNAs submitted to GenBank. Queries based on contig (UniTrans), UniProt or GO. 27k FLcDNAs (from this project). 76k GenBank FLIcDNAs plus 7k unfinished (from this project). 797k maize ESTs from GenBank segregated by library. FLcDNA Tutorial, Why FLcDNA, Transgenic Plants. Approach, Glossary, Resources. Last Modified: 10 Dec 2009.

INTERNAL PAGES

maizecdna.org

1

PAVE maize EST contigs

http://www.maizecdna.org/about

Our objectives and experimental approach. Main people on project. Links to other maize resources. A tutorial on full length sequencing and transgenic plants.

2

Maize FL-cDNA Outreach

http://www.maizecdna.org/outreach

Arizona Genomics Institiute Arizona Genomics Computational Laboratory Stanford University. THE MAIZE FULL-LENGTH cDNA PROJECT. Launched in 2005 with funding from the National Science Foundation, the Maize Full-length cDNA. Project will, over the course of three years, determine the sequence of approximately 30,000 maize full-length complementary DNAs (cDNAs) and 360,000 expressed sequence tags (ESTs). From a wide variety of maize tissue types. The project s experimental approach. In the maize plant.

3

PAVE maize EST contigs

http://www.maizecdna.org/download

Sequences from library #1. Sequences from library #2. Traces from library #1. Traces from library #2. Order clones from Arizona Genomic Institute:. Download initial 10317 GenBank FLcDNAs. Download 2nd submission of 2466 GenBank FLcDNAs. Download 3rd submission of 4183 GenBank FLcDNAs. Download 4th submission of 5530 GenBank FLcDNAs. Download 5th submission of 4959 GenBank FLcDNAs.

4

PAVE Maize FLcDNA

http://www.maizecdna.org/assemblies

Arizona Genomics Computational Laboratory. Our finished maize FLIcDNAs. All FLIcDNA plus our 7k unfinished. 797k EST contigs aligned. Links back to 76k FLcDNA. Links back to 797k EST contigs. Zea Mays compared to several. Naming in the 76k FLIcDNA assemblies. Soderlund et al. [4]. Soderlund et al. [4]. Alexandrov et al. [1]. Lai et al. [3]. Jia et al. [2]. Last Modified: 28 May 2010.

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grassius.org

GRASSIUS :: Links

http://www.grassius.org/links.html

NSF Plant Genome Project. A Recommendation for Naming Transcription Factor Proteins in the Grasses. John Gray, Michael Bevan, Thomas Brutnell, C. Robin Buell, Karen Cone, Sarah Hake, David Jackson, Elizabeth Kellogg, Carolyn Lawrence, Susan McCouch, Todd Mockler, Stephen Moose, Andrew Paterson, Thomas Peterson, Daniel Rokshar, Glaucia Mendes Souza, Nathan Springer, Nils Stein, Marja Timmermans, Guo-Liang Wang, and Erich Grotewold. Plant Physiol. 2009 149: 4-6. [Full Text]. Maize Assembled Genomic Island.

agcol.arizona.edu

Maize FPC Map

http://www.agcol.arizona.edu/fpc/maize

Funded in part by NFS grant #9872655. Funded in part by NSF grant #0211851. Nelson, W, A Bharti, E Butler, F Wei, G Fuks, H Kim, R Wing, J Messing, and C Soderlund (2005). Whole-Genome Validation of High-Information-Content Fingerprinting. Plant Physiology. Coe E, Cone K, McMullen M, Chen S, Davis G, Gardiner J, Liscum E, Polacco M, Paterson A, Sanchez-Villeda H, Soderlund C, Wing R (2002). Access to the maize genome: an integrated physical and genetic map. Plant Physiology.

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maizecdna.org

Maize Full Length cDNA Project

Arizona Genomics Computational Laboratory. This project has been funded by NSF award # 0501857. PIs: Y. Yu, C. Soderlund, V. Walbot). 364,385 ESTs submitted to GenBank. 27,455 FLcDNAs submitted to GenBank. Queries based on contig (UniTrans), UniProt or GO. 27k FLcDNAs (from this project). 76k GenBank FLIcDNAs plus 7k unfinished (from this project). 797k maize ESTs from GenBank segregated by library. FLcDNA Tutorial, Why FLcDNA, Transgenic Plants. Approach, Glossary, Resources. Last Modified: 10 Dec 2009.

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