maizev4.gramene.org

ensembl.gramene.org

Gramene

http://ensembl.gramene.org/species.html

Beta vulgaris subsp. vulgaris. Oryza brachyantha.v1.4b. O longistaminata v1.0. Oryza meridionalis v1.3. Gramene release 51 - Aug 2016 EMBL-EBI. Maize B73 RefGen v4 PreRelease Browser.

ensembl.gramene.org

Physcomitrella patens - Ensembl Genomes

http://ensembl.gramene.org/Physcomitrella_patens/Info/Index

Are non-vascular plants that appeared very early in the fossil record, soon after the transition of plants to terrestrial environments. The. More information and statistics. More information and statistics. Display your data in Ensembl Plants. What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs. More about this genebuild. Download genes, cDNAs, ncRNA, proteins - FASTA. Update your old Ensembl IDs. What can I find? Genomic alignments [3] [ Show.

ensembl.gramene.org

Ensembl Genomes: Triticum aestivum - Details

http://ensembl.gramene.org/Triticum_aestivum/Info/Annotation

Triticum aestivum Assembly and Gene Annotation. This assembly and annotation is available for use under the terms of the Toronto Agreement. On prepublication data sharing. The previous wheat assembly ( IWGSC CSS. And every other plant from release 31 is available in the new Ensembl Plants archive. Bread wheat) is a major global cereal grain essential to human nutrition. Wheat was one of the first cereals to be domesticated, originating in the fertile crescent. Which hybridized again with. And is fully de...

ensembl.gramene.org

Gramene

http://ensembl.gramene.org/info/website/index.html

Track Hub Support in Ensembl. Ensembl: Help and Documentation. If you have a question that is not answered here, please Contact us. Looking for context-sensitive help? Button to get a pop-up help box containing a brief explanation of the page or image you're looking at. The following browsers are fully supported, i.e. all site features including JavaScript and CSS styles should work properly:. The following are not officially supported but should work with most or all of the site's current features:.

ensembl.gramene.org

Oryza sativa Japonica Group - Ensembl Genomes

http://ensembl.gramene.org/Oryza_sativa/Info/Index

Search Oryza sativa Japonica. Oryza sativa Japonica Group. Japonica (rice) is the staple food for 2.5 billion people. It is the grain with the second highest worldwide production after. In addition to its agronomic importance, rice is an important model species for monocot plants and cereals such as maize, wheat, barley and sorghum. Has a compact diploid genome of approximately 500 Mbp (n=12) compared with the multi-gigabase genomes of maize, wheat and barley. More information and statistics. Gramene spe...

ensembl.gramene.org

Gramene

http://ensembl.gramene.org/downloads.html

Download a sequence or region. Click on the 'Export data' button in the lefthand menu of most pages to export:. GTF or GFF features. Custom datasets can be retrieved using the BioMart data-mining tool. You may find exploring this web-based query tool easier than extracting information direct from our databases. Write your own Perl scripts to retrieve small-to-medium datasets. All our data, as well as added functionality, is available through the Ensembl Perl API. You can also use our REST API.

ensembl.gramene.org

Ensembl Genomes: Oryza sativa Japonica Group - BLAST search

http://ensembl.gramene.org/genome_browser/Tools/Blast?db=core

Beta vulgaris subsp. vulgaris. Gramene is produced in collaboration with Ensembl Plants. Gramene release 51 - Aug 2016 EMBL-EBI. Maize B73 RefGen v4 PreRelease Browser.

ensembl.gramene.org

Hordeum vulgare - Ensembl Genomes

http://ensembl.gramene.org/Hordeum_vulgare/Info/Index

The barley genome assembly in Ensembl Plants is version 082214v1. This is a gene-space assembly of. Generated by the International Barley Genome Sequencing Consortium. With contigs ordered into chromosomal pseudomolecules using POPSEQ data from Ariyadasa et al. And Mascher et al. The gene models are provided by the PGSB. Group at the German Research Centre for Environmental Health. The data presented in Ensembl Plants has been organised as part of the U.K. Barley Genome Sequencing Project. Gramene releas...

ensembl.gramene.org

Arabidopsis thaliana - Ensembl Genomes

http://ensembl.gramene.org/Arabidopsis_thaliana/Info/Index

Is a small flowering plant that is widely used as a model organism in plant biology. Arabidopsis is a member of the mustard (Brassicaceae) family, which includes cultivated species such as cabbage and radish. Arabidopsis is not of major agronomic significance, but it offers important advantages for basic research in genetics and molecular biology. Has a genome size of 135 Mbp, and a haploid chromosome number of 5. More information and statistics. More information and statistics. What can I find?

ensembl.gramene.org

Gramene

http://ensembl.gramene.org/compara_analyses.html

Genomic alignments and syntenies. Information about the analyses is available on http:/ www.ensemblgenomes.org. Click on a species name to expand/collapse its alignment list. Click on a analysis name to see available statistics. Or click a species names to expand/collapse its alignment list. Gramene release 51 - Aug 2016 EMBL-EBI. Maize B73 RefGen v4 PreRelease Browser.