marmoset.braincircuits.org

Brain Architecture Project

Your browser does not support the video tag. About The Marmoset Brain Architecture Project. The marmoset brain connectivity atlas is part of the Brain Architecture Project. Our immediate aim is to create a systematic, publicly available digital repository for data on the connections between different cortical areas, in a primate species. LICENSING AND CITATION POLICY. For licensing information and citation policy page.

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Brain Architecture Project | marmoset.braincircuits.org Reviews

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Your browser does not support the video tag. About The Marmoset Brain Architecture Project. The marmoset brain connectivity atlas is part of the Brain Architecture Project. Our immediate aim is to create a systematic, publicly available digital repository for data on the connections between different cortical areas, in a primate species. LICENSING AND CITATION POLICY. For licensing information and citation policy page.

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Brain Architecture Project | marmoset.braincircuits.org Reviews

https://marmoset.braincircuits.org

Your browser does not support the video tag. About The Marmoset Brain Architecture Project. The marmoset brain connectivity atlas is part of the Brain Architecture Project. Our immediate aim is to create a systematic, publicly available digital repository for data on the connections between different cortical areas, in a primate species. LICENSING AND CITATION POLICY. For licensing information and citation policy page.

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marmoset.braincircuits.org

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Brain Architecture Project

http://marmoset.braincircuits.org/reference

Stereotaxic atlas of the marmoset brain (pdf 61.4 Mb). Full pdf of the book The Marmoset Brain in Stereotaxic Coordinates by Paxinos, Watson, Petrides, Rosa and Tokuno (Academic Press, 2012). Procedure for registration of different cases to marmoset brain template (pdf 11.6 Mb). Toolbox" paper by Majka, Chaplin, Yu, Tolpygo, Mitra, Wojcik and Rosa (J Comp Neurol 524: 2161-2181, 2016). LICENSING AND CITATION POLICY. For licensing information and citation policy page.

2

Brain Architecture Project

http://marmoset.braincircuits.org/whitepaper

Technical White Paper: Marmoset Brain Connectivity Atlas. The marmoset brain connectivity. Atlas is part of the Brain Architecture Project. Our immediate aim is to create a systematic, publicly available digital repository for data on the connections between different cortical areas, in a primate species. This initial stage takes advantage of a large collection of materials obtained over two decades of research, using fluorescent retrograde tracer injections in adult marmosets ( Callithrix jacchus. The o...

3

Brain Architecture Project

http://marmoset.braincircuits.org/injection

For project documentation and technical details click here. LICENSING AND CITATION POLICY. For licensing information and citation policy page.

4

Brain Architecture Project

http://marmoset.braincircuits.org/other_data

Volumetric digital common marmoset brain template (zip 9.6 Mb). This package contains volumetric representation of the cortical structures from The Marmoset Brain in Stereotactic Coordinates atlas (Paxinos et al., 2012). More details can be found in the readme file. LICENSING AND CITATION POLICY. For licensing information and citation policy page.

5

Brain Architecture Project

http://marmoset.braincircuits.org/about

The Marmoset Brain Architecture Project is developed by the Monash marmoset team. Material made public on the Brain Architecture Project is licensed under a Creative Commons Attribution-ShareAlike 4.0 (CC-BY-SA). Accepted Article’, doi: 10.1002/cne.24023. A list of publications, which is related to the project, can be found here. LICENSING AND CITATION POLICY. For licensing information and citation policy page.

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braincircuits.org

Circuits & Connectivity | Brain Architecture Project

http://www.braincircuits.org/circuits-connectivity

109;ichelse@cshl.edu. Circuits & Connectivity. Circuits & Connectivity. This is the website for the Circuits and Connectivity (in the vertebrate brain) course at Cold Springs Harbor Laboratory (Laurel Hollow, NY). The website contains materials pertaining to past as well as future sessions of the course, and a number of web resources, including course schedule, software, and a question and answer system for asking about course issues. Cold Spring Harbor Lab.

braincircuits.org

Collaborators | Brain Architecture Project

http://www.braincircuits.org/collaborators

Michelse@cshl.edu. Circuits & Connectivity. Jason Bohland, PhD. Assistant Professor, Boston University. Michael Hawrylycz, PhD. Allen Institute for Brain Science. Moritz Helmstaedter, MD, PhD. Max Planck Institute of Neurobiology, Munich. Andreas Jeromin, PhD. Banyan Biomarkers, Inc. Harvey Karten, MD. Professor of Neurosciences, UCSD. Pavel Osten, PhD. Associate Professor, CSHL. Kathleen Rockland, PhD. Professor, MIT / RIKEN. Ian Wickersham, PhD. Massachusetts Institute of Technology. Byron Galbraith, MS.

braincircuits.org

Sponsors | Brain Architecture Project

http://www.braincircuits.org/sponsors

Michelse@cshl.edu. Circuits & Connectivity. The Brain Architecture Project began with a focus on informatics and on the human brain, with seed funding support provided by the WM Keck Foundation. That enabled planning meetings at the Banbury conference center at CSHL in 2006-8. The project received funding in the fall of 2009 from the NIH to systematically map brainwide connectivity in the mouse brain. An announcement of the Transformative R01 award from the NIH director’s office is here. Alerations in Br...

braincircuits.org

allen atlas brain toolbox | Brain Architecture Project

http://www.braincircuits.org/allen-atlas-brain-toolbox

109;ichelse@cshl.edu. Circuits & Connectivity. Allen atlas brain toolbox. The Brain Gene Expression Analysis toolbox. This toolbox is a Matlab implementation of computational techniques for the quantitative analysis of digitized brain-wide gene-expression data from the Allen Atlas of the adult mouse brain (last updated: October 15 2013, cell-type-specific data added to the toolbox). Visualizations of voxelized data (at a spatial resolution of 200 microns);. Clustering of sets of genes and voxels.

braincircuits.org

Community | Brain Architecture Project

http://www.braincircuits.org/community-2

109;ichelse@cshl.edu. Circuits & Connectivity. Engaging the research and medical communities, as well as the general public, is of strong interest in the Brain Architecture Project. A few links are available now, and we intend to augment these and add features as the project unfolds:. Cold Spring Harbor Lab. Info@brainarchitecture.org. Mouse Brain Gene Expression Analysis Toolbox: Download. We're not around right now. But you can send us an email and we'll get back to you, asap.

braincircuits.org

Discussion Forum | Brain Architecture Project

http://www.braincircuits.org/discussion-forum

Michelse@cshl.edu. Circuits & Connectivity. Hello this is testing forum content. Cold Spring Harbor Lab. Info@brainarchitecture.org. Mouse Brain Gene Expression Analysis Toolbox: Download. We're not around right now. But you can send us an email and we'll get back to you, asap.

braincircuits.org

Mouse Home | Brain Architecture Project

http://www.braincircuits.org/mouse-home

109;ichelse@cshl.edu. Circuits & Connectivity. About the Mouse Brain Architecture Project. The goal of the Mouse Brain Architecture (MBA) project is to generate brainwide maps of inter-regional neural connectivity. These maps will thus specify the inputs and outputs of every brain region, at a mesoscopic level of analysis corresponding to brain compartments defined in classical neuroanatomy. To determine the outputs of a brain region (i.e., the other regions it projects to),. You are free to share (copy ...

braincircuits.org

Publications | Brain Architecture Project

http://www.braincircuits.org/publications

Michelse@cshl.edu. Circuits & Connectivity. Jeong, M., Kim, Y., Kim, J., Ferrante, D. D., Mitra, P. P., Osten, P., and Kim, D. (2016). Comparative three-dimensional connectome map of motor cortical projections in the mouse brain. Scientific Reports, 6, 20072. http:/ doi.org/10.1038/srep20072. Pinskiy V, Tolpygo AS, Jones J, Weber K, Franciotti N, Mitra PP (2013). A low-cost technique to cryo-protect and freeze rodent brains, precisely aligned to stereotaxic coordinates for whole-brain cryosectioning.

braincircuits.org

Project Overview | Brain Architecture Project

http://www.braincircuits.org/project-overview

Michelse@cshl.edu. Circuits & Connectivity. The Brain Architecture Project. Is a collaborative effort aimed at creating an integrated resource containing knowledge about nervous system architecture in multiple species, with a focus on mouse and human. In its traditional setting of buildings, architecture may be defined as the shaping of space for human use. In the case of nervous systems,. Mouse Brain Architecture Project. Further information about the MBAP may be found at the main website for the project.

braincircuits.org

Program Overview | Brain Architecture Project

http://www.braincircuits.org/program-overview

Michelse@cshl.edu. Circuits & Connectivity. July 6 – 21, 2011. May 15, 2011. Cold Spring Harbor Lab. Info@brainarchitecture.org. Mouse Brain Gene Expression Analysis Toolbox: Download. We're not around right now. But you can send us an email and we'll get back to you, asap.

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Your browser does not support the video tag. About The Marmoset Brain Architecture Project. The marmoset brain connectivity atlas is part of the Brain Architecture Project. Our immediate aim is to create a systematic, publicly available digital repository for data on the connections between different cortical areas, in a primate species. LICENSING AND CITATION POLICY. For licensing information and citation policy page.

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