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Microbial Ecology Evolution and Bioinformatics

João F. Matias Rodrigues. Christian von Mering's lab. Institute of Molecular Life Sciences. University of Zürich. Friday, 31st March. MAPseq (release) - fast, accurate and consistent tool to map raw sequence reads to a hierarchical OTUs and taxonomic labels provided in the package. MAPclust (alpha) - clustering of unaligned fasta sequences. Denoiser (beta) - very fast clustering of sequences with only a few nucleotide differences. HPC-CLUST (release) - clustering of large sets of aligned sequences.

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Microbial Ecology Evolution and Bioinformatics | matiasrodrigues.com Reviews

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João F. Matias Rodrigues. Christian von Mering's lab. Institute of Molecular Life Sciences. University of Zürich. Friday, 31st March. MAPseq (release) - fast, accurate and consistent tool to map raw sequence reads to a hierarchical OTUs and taxonomic labels provided in the package. MAPclust (alpha) - clustering of unaligned fasta sequences. Denoiser (beta) - very fast clustering of sequences with only a few nucleotide differences. HPC-CLUST (release) - clustering of large sets of aligned sequences.

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1 microbial ecology evolution

2 and bioinformatics

3 news

4 research

5 software

6 other projects

7 publications

8 postdoctoral researcher

9 switzerland

10 bioinformatics software

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Microbial Ecology Evolution and Bioinformatics | matiasrodrigues.com Reviews

https://matiasrodrigues.com

João F. Matias Rodrigues. Christian von Mering's lab. Institute of Molecular Life Sciences. University of Zürich. Friday, 31st March. MAPseq (release) - fast, accurate and consistent tool to map raw sequence reads to a hierarchical OTUs and taxonomic labels provided in the package. MAPclust (alpha) - clustering of unaligned fasta sequences. Denoiser (beta) - very fast clustering of sequences with only a few nucleotide differences. HPC-CLUST (release) - clustering of large sets of aligned sequences.

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matiasrodrigues.com

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Microbial Ecology Evolution and Bioinformatics

http://www.matiasrodrigues.com/publications.html

João F. Matias Rodrigues. Christian von Mering's lab. Institute of Molecular Life Sciences. University of Zürich. Warinner, C., et al . HPC-CLUST: clustering of large number of nucleotide sequences. Matias Rodrigues, J.F. Superessential reactions in metabolic networks and the evolution of drug resistance. Barve, A., Matias Rodrigues, J.F. Proc Natl. Acad. Sci. 109(18):E1121-30. doi: 10.1073/pnas.1113065109. Differences in cell division rates drive the evolution of terminal differentiation in microbes.

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Microbial Ecology Evolution and Bioinformatics

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João F. Matias Rodrigues. Christian von Mering's lab. Institute of Molecular Life Sciences. University of Zürich. Friday, 22nd March. A picture is worth a thousand words. Sunday, 17th March. Sorting in linear time. How you can get sorts in linear time using radix sorting. With this approach you can do a really fast in-place sort. Sunday, 17th March. Developers, developers, developers, . One side of microsoft that I am sure not many people knew about.

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Microbial Ecology Evolution and Bioinformatics

http://www.matiasrodrigues.com/other.html

João F. Matias Rodrigues. Christian von Mering's lab. Institute of Molecular Life Sciences. University of Zürich. A character animation and story creation website. With FunTuns you can easily create an animated story with predesigned characters. Add your own text balloons and even voice to your story. In the end, share your story with friends and family. 2013 João F. Matias Rodrigues joao@matiasrodrigues.com.

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Microbial Ecology Evolution and Bioinformatics

http://www.matiasrodrigues.com/software.html

João F. Matias Rodrigues. Christian von Mering's lab. Institute of Molecular Life Sciences. University of Zürich. Distributed hierarchical clustering of aligned sequences. Using hpc-clust it is possible to cluster more than a million aligned sequences in a few hours, on a computer cluster with 256 cores. 2013 João F. Matias Rodrigues joao@matiasrodrigues.com.

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João F. Matias Rodrigues. Christian von Mering's lab. Institute of Molecular Life Sciences. University of Zürich. Friday, 31st March. MAPseq (release) - fast, accurate and consistent tool to map raw sequence reads to a hierarchical OTUs and taxonomic labels provided in the package. MAPclust (alpha) - clustering of unaligned fasta sequences. Denoiser (beta) - very fast clustering of sequences with only a few nucleotide differences. HPC-CLUST (release) - clustering of large sets of aligned sequences.

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