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Mats Töpel

Skip to main content. My main research interest concerns the evolution of chloroplasts, and I am particularly interested in the evolution of the two protein complexes Translocons at the Outer and Inner Chloroplast envelope membranes (TOC and TIC respectively). These protein complexes transport nuclear-encoded proteins into the chloroplast, and the evolution of TOC/TIC is an important part of the transformation of the ancient cyanobiont into a modern chloroplast. Read more about About me. You will in this...

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Mats Töpel | matstopel.se Reviews

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Skip to main content. My main research interest concerns the evolution of chloroplasts, and I am particularly interested in the evolution of the two protein complexes Translocons at the Outer and Inner Chloroplast envelope membranes (TOC and TIC respectively). These protein complexes transport nuclear-encoded proteins into the chloroplast, and the evolution of TOC/TIC is an important part of the transformation of the ancient cyanobiont into a modern chloroplast. Read more about About me. You will in this...

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1 mats töpel

2 main menu

3 open notebook

4 code

5 albiorix

6 publications and cv

7 blog

8 tutorials and presentations

9 about me

10 info@matstopel se

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Mats Töpel | matstopel.se Reviews

https://matstopel.se

Skip to main content. My main research interest concerns the evolution of chloroplasts, and I am particularly interested in the evolution of the two protein complexes Translocons at the Outer and Inner Chloroplast envelope membranes (TOC and TIC respectively). These protein complexes transport nuclear-encoded proteins into the chloroplast, and the evolution of TOC/TIC is an important part of the transformation of the ancient cyanobiont into a modern chloroplast. Read more about About me. You will in this...

INTERNAL PAGES

matstopel.se

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Skeletonema marinoi de novo genome project | Mats Töpel

http://www.matstopel.se/notebook/skeletonema_marinoi_de_novo_genome_project

Skip to main content. Skeletonema marinoi de novo genome project. On Mon, 03/04/2013 - 10:10. This project is conducted in collaboration with Anders Blomberg. A description of the project can be found at Annas webpage. We recently received the first sequence datasets from SciLife Lab. They had preformed a "quick and dirty" assembly, without doing any filtering or trimming of the data first. Started a filtering analysis in "/data7/skeletonema mats/20130304" on sparc1. 2013-03-10] Started a CLC assembly an...

2

Testing Trinity on Surirella brebissonii RNA data | Mats Töpel

http://www.matstopel.se/node/70

Skip to main content. Testing Trinity on Surirella brebissonii RNA data. On Sat, 09/07/2013 - 10:37. Testing the digital normalisation feature of the Trinity package. Normalisation of unfiltered data. Usr/local/trinityrnaseq r2013 08 14/util/normalize by kmer coverage.pl - seqType fq - JM 80G - max cov 50 - left sb rna raw 1.fastq - right sb rna raw 2.fastq - pairs together - JELLY CPU 12 - PARALLEL STATS - KMER SIZE 25 - max pct stdev 100 - output norm 50 raw norm 50 raw.log.

3

Littorina saxatilis de novo genome project | Mats Töpel

http://www.matstopel.se/notebook/littorina_saxatilis_genome_project

Skip to main content. Littorina saxatilis de novo genome project. On Mon, 02/18/2013 - 22:33. 2 120125 BC0B5UACXX Littorins-p136 7 1-index 4 1.fastq - 103'209'945 sequences (Data 120125-1). 2 120125 BC0B5UACXX Littorins-p136 7 1-index 4 2.fastq - 103'209'945 sequences (Data 120125-2). 2 120313 AC0GTUACXX Littorins-p136 7 1 index4 1.fastq - 70'341'110 sequences (Data 120313-1). 2 120313 AC0GTUACXX Littorins-p136 7 1 index4 2.fastq - 70'341'110 sequences (Data 120313-2). Assembly and filtering analyses.

4

Publications & CV | Mats Töpel

http://www.matstopel.se/publications

Skip to main content. Publication statistics in Google Scholar. Eriksson T., Lundberg M., Töpel M. Östensson P., Smedmark P. E. E. (2015) Sibbaldia: a molecular phylogenetic study of a remarkably polyphyletic genus in Rosaceae. Plant Systematics and Evolution. Volume 301, Issue 1 (2015), Page 171-184 doi: 10.1007/s00606-014-1063-3. Doi: http:/ dx.doi.org/10.1101/009274. Antonelli A, Condamine FL, Hettling H, Nilsson K, Nilsson RH, Oxelman B, Sanderson MJ, Sauquet H, Scharn R, Silvestro D, Töpel M. Elväng...

5

The Albiorix cluster | Mats Töpel

http://www.matstopel.se/albiorix

Skip to main content. This text is an introduction to the Albiorix cluster at BioEnv. And was co-authored with Henrik Nilsson. Interacting with UNIX type operating systems. Moving files to Albiorix. Moving yourself to Albiorix. Running phylogenetic software in bash. SGE - The queue system on Albiorix. Software installed on Albiorix. Interacting with UNIX type operating systems. Present working directory, where am I in the file system? Henrik@pc157080 henrik]$ pwd /Users/henrik [henrik@pc157080 henrik]$.

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antonelli-lab.net

THE ANTONELLI LAB – Evolution and biogeography with focus on the Neotropics

http://www.antonelli-lab.net/people.php

Alexandre Antonelli (P.I.). Full Professor in Systematics and Biodiversity at Department of Biological and Environmental Sciences. Scientific curator at Gothenburg botanical garden. Post-doc, Institute of Systematic Botany, University of Zurich. PhD in evolution and biodiversity, University of Gothenburg. Daniele is an Assistant Professor. Macroevolution, Bayesian statistics, stochastic evolutionary processes, species diversification. Josué Anderson Rêgo Azevedo. Josué is currently doing a PhD. Christine...

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Mats Töpel

Skip to main content. My main research interest concerns the evolution of chloroplasts, and I am particularly interested in the evolution of the two protein complexes Translocons at the Outer and Inner Chloroplast envelope membranes (TOC and TIC respectively). These protein complexes transport nuclear-encoded proteins into the chloroplast, and the evolution of TOC/TIC is an important part of the transformation of the ancient cyanobiont into a modern chloroplast. Read more about About me. You will in this...

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