medicinalplantgenomics.msu.edu

Medicinal Plant Genomics Resource

Medicinal Plants Genomics Resource (MPGR) is an NIH funded project that provides transcript assembly sequences and annotation for those sequences from fourteen plants that are known or believed to contain natural compounds that are of interest to medical researchers. The plants utilized by MPGR are Atropa belladonna, Camptotheca acuminata, Cannabis sativa, Catharanthus roseus, Digitalis purpurea, Dioscorea villosa, Echinacea purpurea, Ginkgo biloba, Hoodia gordonii, Hypericum perforatum, Panax quinquefolius

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Medicinal Plant Genomics Resource | medicinalplantgenomics.msu.edu Reviews

<META> DESCRIPTION

Medicinal Plants Genomics Resource (MPGR) is an NIH funded project that provides transcript assembly sequences and annotation for those sequences from fourteen plants that are known or believed to contain natural compounds that are of interest to medical researchers. The plants utilized by MPGR are Atropa belladonna, Camptotheca acuminata, Cannabis sativa, Catharanthus roseus, Digitalis purpurea, Dioscorea villosa, Echinacea purpurea, Ginkgo biloba, Hoodia gordonii, Hypericum perforatum, Panax quinquefolius

<META> KEYWORDS

1 what's new

2 list of plants

3 atropa belladonna

4 camptotheca acuminata

5 cannabis sativa

6 catharanthus roseus

7 digitalis purpurea

8 dioscorea villosa

9 echinacea purpurea

10 ginkgo biloba

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what's new,list of plants,atropa belladonna,camptotheca acuminata,cannabis sativa,catharanthus roseus,digitalis purpurea,dioscorea villosa,echinacea purpurea,ginkgo biloba,hoodia gordonii,hypericum perforatum,panax quinquefolius,rauvolfia serpentina,tools

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Medicinal Plant Genomics Resource | medicinalplantgenomics.msu.edu Reviews

https://medicinalplantgenomics.msu.edu

Medicinal Plants Genomics Resource (MPGR) is an NIH funded project that provides transcript assembly sequences and annotation for those sequences from fourteen plants that are known or believed to contain natural compounds that are of interest to medical researchers. The plants utilized by MPGR are Atropa belladonna, Camptotheca acuminata, Cannabis sativa, Catharanthus roseus, Digitalis purpurea, Dioscorea villosa, Echinacea purpurea, Ginkgo biloba, Hoodia gordonii, Hypericum perforatum, Panax quinquefolius

INTERNAL PAGES

medicinalplantgenomics.msu.edu

1

Medicinal Plant Genomics Resource

http://medicinalplantgenomics.msu.edu/new.shtml

Genome Putative Function Search Tool. March 5, 2015. We have released the genome of Catharanthus roseus. Variety Sunstorm Apricot as described in Kellner et al. 2015. See the genome browser. And Dryad download page. For access to the data. Methods for transcriptome assembly as performed in the MPGR project are described in Gongora-Castillo et al. 2012. Analysis of the Camptotheca acuminata. Transcriptomes are described in PLoS ONE. And analysis of the Valeriana officinalius. We have released a set of fun...

2

Medicinal Plant Genomics Resource

http://medicinalplantgenomics.msu.edu/index.shtml

Genome Putative Function Search Tool. Genome sequence of Catharanthus roseus. We have generated the genome sequence of Catharanthus roseus. Variety Sunstorm Apricot using whole genome shotgun sequencing. The analysis of the genome is described in Kellner et al. 2015. We generated an assembly of 523 Mb with an N50 scaffold size of 26.2 kbp and annotated a total of 33,829 genes. The genome can be downloaded here. And analysis tools including a genome browser. And BLAST search site. For more information abo...

3

Medicinal Plant Genomics Resource

http://medicinalplantgenomics.msu.edu/participants.shtml

Genome Putative Function Search Tool. Joe Chappell, Department of Plant and Soil Sciences, University of Kentucky, Lexington, KY, 40546-0312. Email Joe a comment. Joe Chappell's Home Page. Dean DellaPenna, Department of Biochemistry and Molecular Biology, Michigan State University, East Lansing, MI, 48824-1319. Email Dean a comment. Dean DellaPenna's Home Page. Sarah E. O’Connor, Department of Biological Chemistry, John Innes Centre, Colney, Norwich, NR4 7UH, UK. Email Sarah a comment. Buell Lab Home Page.

4

Medicinal Plant Genomics Resource

http://medicinalplantgenomics.msu.edu/final_version_release_info.shtml

Genome Putative Function Search Tool. Release of the Medicinal Plant Consortium Transcriptome Resources. The Medicinal Plant Consortium is a NIH supported project (GM092521) consists of 13 collaborating research units from 7 institutions focused on providing transcriptomic and metabolomic resources for 14 key medicinal plants to the worldwide research community for the advancement of drug production and development. The Principal Investigators of the MPC are Cornelius Barry. Mahmoud A. ElSohly. These are...

5

Medicinal Plant Genomics Resource

http://medicinalplantgenomics.msu.edu/objectives.shtml

Genome Putative Function Search Tool. Specific Aims for Medicinal Plant Genomics Resource. List of Objectives for Medicinal Plant Genomics Resource. Obtain well-characterized and reproducible samples of plant materials for the 14 taxonomically diverse medicinal plant species. For each species, up to 20 tissue samples will be selected that are anticipated to have significant variation in concentrations of medicinal compounds: 10 core tissue samples and up to 10 additional samples selected by the relev...

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plantengine.eu

Links | PlantEngine (COST Action FA1006)

http://www.plantengine.eu/links

Skip to main content. Plant Metabolic Engineering for High Value Products. Short-Term Scientific Missions (STSM). COST Webpage of the Action. Http:/ w3.cost.eu/index.php? Very useful organizations, projects, and resource pages. Medicinal Plant Genomics Resource - http:/ medicinalplantgenomics.msu.edu/. Transcriptome assemblies for 14 medicinal plants, together with expression data and functional annotation, plus metabolomics data for some of the species. PhytoMetaSyn - http:/ www.phytometasyn.ca/. The 10...

terpmed.eu

Links to external resources

http://www.terpmed.eu/Links.html

Links to external resources. The links on this page provide access to external omics resources relating to terpenoid metabolism and medicinal plants:. A Comparative Omics Database for Plant Trichome. Medicinal Plant Genomics Resource. A chemical and genomic approach to identify and produce bioactive compounds. Working. Please wait.

pcp.oxfordjournals.org

CathaCyc, a Metabolic Pathway Database Built from Catharanthus roseus RNA-Seq Data

http://pcp.oxfordjournals.org/content/54/5/673.long

Plant and Cell Physiology. View Current Issue (Volume 57 Issue 8 August 2016). Plant and Cell Physiology. CathaCyc, a Metabolic Pathway Database Built from. Gino J.E. Baart. Department of Plant Systems Biology, VIB, B-9052 Gent, Belgium. Department of Plant Biotechnology and Bioinformatics, Ghent University, B-9052 Gent, Belgium. Department of Biology, Laboratory of Protistology and Aquatic Ecology, Ghent University, B-9000 Gent, Belgium. These authors contributed equally to this work. December 14, 2012.

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These days the term Alternative Medicine. Became very common around the globe, it focuses on the idea of using the plants for medicinal purpose. Database is dedicated to provide the first window to find the claimed plants around Bangladesh with their scientific name, family name, local name, utilizing part, source of plant, ailment and available extraction procedure.

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Medicinal Plant Genomics Resource

Genome Putative Function Search Tool. Genome sequence of Calotropis gigantea. We have generated the genome sequence of Calotropis gigantea. A producer of anti-cancer and anti-malarial cardenolides, using whole genome shotgun sequencing. The analysis of the genome is described in Hoopes et al. 2017. We generated an assembly of 157 Mb with an N50 scaffold size of 806 kbp and annotated a total of 18,197 high-confidence genes. The genome can be downloaded Dryad Digital Repository. And BLAST search site.

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