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Meiler Lab

Computational Chemical and Structural Biology. Jean and Alexander Heard library. TIPS - Next Generation Vaccines. Fun @ Meiler lab. The Bio Chemical Library (BCL). Fitting molecules in low resolution electron density maps. A growing technique in protein structure determination is cryo-electron microscopy. Cryo-EM provides low resolution electron density maps ( 8 Ångström) . As this data become more accurate and you can use this data not only to determine the overall structure of protei...Antibody structu...

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Computational Chemical and Structural Biology. Jean and Alexander Heard library. TIPS - Next Generation Vaccines. Fun @ Meiler lab. The Bio Chemical Library (BCL). Fitting molecules in low resolution electron density maps. A growing technique in protein structure determination is cryo-electron microscopy. Cryo-EM provides low resolution electron density maps ( 8 Ångström) . As this data become more accurate and you can use this data not only to determine the overall structure of protei...Antibody structu...
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Meiler Lab | meilerlab.org Reviews

https://meilerlab.org

Computational Chemical and Structural Biology. Jean and Alexander Heard library. TIPS - Next Generation Vaccines. Fun @ Meiler lab. The Bio Chemical Library (BCL). Fitting molecules in low resolution electron density maps. A growing technique in protein structure determination is cryo-electron microscopy. Cryo-EM provides low resolution electron density maps ( 8 Ångström) . As this data become more accurate and you can use this data not only to determine the overall structure of protei...Antibody structu...

INTERNAL PAGES

meilerlab.org meilerlab.org
1

Meiler Lab

http://www.meilerlab.org//index.php/bclcommons/show/b_apps_id/1

Computational Chemical and Structural Biology. Jean and Alexander Heard library. TIPS - Next Generation Vaccines. Fun @ Meiler lab. Linux x86 64 (64-bit). CentOS 5 / RedHat 5. Mac OS X 10.4 or greater. Bcl-34.0-Linux-x86 64.sh. To run bcl applications, academic users need a license from our license server. Commercial users need to contact us at bcl-commercial-support@meilerlab.org. For licensing and pricing information. Group of applications that use only BCL-generated input. BuildRotamerLibrary does wha...

2

Meiler Lab

http://www.meilerlab.org/bclcommons

Computational Chemical and Structural Biology. Jean and Alexander Heard library. TIPS - Next Generation Vaccines. Fun @ Meiler lab. Linux x86 64 (64-bit). CentOS 5 / RedHat 5. Mac OS X 10.4 or greater. Bcl-34.0-Linux-x86 64.sh. To run bcl applications, academic users need a license from our license server. Commercial users need to contact us at bcl-commercial-support@meilerlab.org. For licensing and pricing information. Group of applications that use only BCL-generated input. BuildRotamerLibrary does wha...

3

Meiler Lab

http://www.meilerlab.org/index.php/bclcommons

Computational Chemical and Structural Biology. Jean and Alexander Heard library. TIPS - Next Generation Vaccines. Fun @ Meiler lab. Linux x86 64 (64-bit). CentOS 5 / RedHat 5. Mac OS X 10.4 or greater. Bcl-34.0-Linux-x86 64.sh. To run bcl applications, academic users need a license from our license server. Commercial users need to contact us at bcl-commercial-support@meilerlab.org. For licensing and pricing information. Group of applications that use only BCL-generated input. BuildRotamerLibrary does wha...

4

Meiler Lab

http://www.meilerlab.org/index.php/jobs/resources

Computational Chemical and Structural Biology. Jean and Alexander Heard library. TIPS - Next Generation Vaccines. Fun @ Meiler lab. RESPONSIBLE CONDUCT IN RESEARCH. Peer Review of Papers and Proposals. How to Prepare an Constructive, Fair, Unbiased, Effective Review. CHEM 337 - Computational Structural And Chemical Biology. Theoretical and practical aspects of protein sequence alignments,. Secondary structure prediction, comparative modeling, protein-protein. This course includes a laboratory section.

5

Meiler Lab

http://www.meilerlab.org/servers/bcl-academic-license

Computational Chemical and Structural Biology. Jean and Alexander Heard library. Fun @ Meiler lab. What is the Biology and Chemistry Library Project (BCL). Certain BCL modules may be used in conjunction with Rosetta (www.rosettacommons.org). For example, the JUFO secondary structure prediction module of the BCL can be leveraged for Rosetta fragment generation. Files are limited to 4MB in size; if you are a Meiler-Lab member, please login to upload files up to 16MB. Center for Structural Biology.

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LINKS TO THIS WEBSITE

foldit-dev.cs.washington.edu foldit-dev.cs.washington.edu

Categories | Foldit

http://foldit-dev.cs.washington.edu/portal/categories

Top Evolver: Bletchley Park. This the is the overall puzzle category, containing every puzzle except the Beginner puzzles with (. Top Group: DSN @ Home. This category should contain all beginner puzzles from the (. Top Soloist: Bruno Kestemont. Top Evolver: Bletchley Park. Top Group: Beta Folders. Symmetry in proteins refers to what we call oligomers: proteins that use many identical copies of themselves to bind together and form a "symmetric" complex. We call it symmetry because each copy folds the ...

foldit-dev.cs.washington.edu foldit-dev.cs.washington.edu

Forum | Foldit

http://foldit-dev.cs.washington.edu/portal/forum/5

To post new content in the forum. Sticky: Foldit FastFAQ (09/2015). Sticky: Feedback - how to create a good one. By Rav3n pl 104. By Rav3n pl 104. Sticky: HOW TO DOWNLOAD AND START PLAYING FOLDIT! Gives various high cheapest fifa 17 Coins. 11 hours 29 min ago. How to make Ideal Loops. Science game developers aside from CGS? By Adam Rosenthal 104. Here's an idea for dispirited folders -. Upgrading to Windows 10. What if you could ask a band which segments it connects? Some errors in the Spanish traduction.

foldit-web05.cs.washington.edu foldit-web05.cs.washington.edu

Foldit

http://foldit-web05.cs.washington.edu/portal/contest

Open Contests (Show All Contests). Freestyle Design 100 Sandbox. Freestyle Design a 500 length Protein! Frizzled Design Puzzle Contest. GTPase Ras Long b [Open to all] [Open discussion]. Indi 500 segment race. Lost points test two. Miso: a critical protein for mosquito reproduction. Practice folding from scratch. Protein Folding with Point mutations. Tau Protein (441 residue htau40). Test Contest - ML. Test contest for a project at TU Clausthal. Test your PC power. The Marathon of Foldit - New Chapter.

foldit-dev.cs.washington.edu foldit-dev.cs.washington.edu

Feedback | Foldit

http://foldit-dev.cs.washington.edu/portal/feedback

Not able to evo on NEW share from group on 1274. 08/23 18:26, alcor29. Puzzle scores between client and website not as accurate as they should be. 08/23 01:39, gitwut. 1272 crash running recipe, and crash loading same solution track. 08/21 12:07, actiasluna. Cannot Load ED due to Excessive Server Load. 08/19 08:34, inkycatz. Virus detected in Foldit. 08/19 08:29, inkycatz. Another reproductible (but unlikely) one. 08/18 10:06, Susume. Sheet filter not working. 08/18 07:59, Bruno Ke. 08/18 06:39, Bletchle.

fold.it fold.it

Blogs | Foldit

http://fold.it/portal/blog

This is the place where we will describe some of the outcomes and results of your folding work, provide a glimpse of future challenges and developments, and in general give you a better sense of where we are and where foldit hopes to go in the future. IDRI), we would like Foldit players to experience this process. We hope that Foldit players will be able to positively impact a specific neglected disease: tuberculosis (TB). Scientists at the non-profit organization Infectious Disease Research Institute.

fold.it fold.it

Link to the new Foldit Nature article | Foldit

http://fold.it/portal/node/990358

Link to the new Foldit Nature article. We posted the just published NSMB paper. here it is:. Http:/ www.cs.washington.edu/homes/zoran/NSMBfoldit-2011.pdf. This is the second Nature paper we published with Foldit discoveries. This is truly amazing accomplishment. All Foldit players should be proud. We also have two more in the pipeline one of the algorithmic discoveries in Foldit recipes, and a brand new synthetic protein discovered primarily due to the insight of Foldit protein design. Stay tuned.

seneslab.org seneslab.org

The Senes Lab, Department of Biochemistry, University of Wisconsin-Madison

http://www.seneslab.org/alumni.html

In reverse chronological order. PhD program in Biochemistry. Jan 2009 - Feb. 2016 (from Jan. 2015 to Feb. 2016 as a postdoc). FRET-based biophysical characterization of bacterial divisome transmembrane proteins" [ PDF. Postdoc in Mike Ramsey's lab. University of North Carolina at Chapel Hill. LaPointe LM, Taylor KC, Subramaniam S, Khadria A. Rayment I and Senes A "Structural organization of FtsB, a transmembrane protein of the bacterial divisome", Biochemistry. PhD program in Biochemistry. Subramaniam S*...

rosettaserver.graylab.jhu.edu rosettaserver.graylab.jhu.edu

[ROSIE] Ligand Docking Protocol

http://rosettaserver.graylab.jhu.edu/ligand_docking

Welcome to ROSIE Rosetta Online Server that Includes Everyone. Rosetta Ligand Docking Protocol. Submit Ligand Docking task]. Ligand Docking Server Documentation]. Please cite the following article when referring to results from our ROSIE server:. Combs, S. A., Deluca, S. L., DeLuca, S. H., Lemmon, G. H., Nannemann, D. P., Nguyen, E. D., et al. (2013). Small-molecule ligand docking into comparative models with Rosetta. Nature Protocols, 8(7), 1277 1298. doi:10.1038/nprot.2013.074.

rosie.graylab.jhu.edu rosie.graylab.jhu.edu

[ROSIE] Ligand Docking Protocol

http://rosie.graylab.jhu.edu/ligand_docking

Welcome to ROSIE Rosetta Online Server that Includes Everyone. Rosetta Ligand Docking Protocol. Submit Ligand Docking task]. Ligand Docking Server Documentation]. Please cite the following article when referring to results from our ROSIE server:. Deluca, S., Khar, K., Meiler, J. (2015). Fully Flexible Docking of Medium Sized Ligand Libraries with RosettaLigand. PLoS ONE 10(7): e0132508. doi:10.1371/journal.pone.0132508. Nature Protocols, 8(7), 1277 1298. doi:10.1038/nprot.2013.074.

fold.it fold.it

What's New | Foldit

http://fold.it/portal/news2

Here's an update from our developer free radical, in case the attribution on the news isn't showing up for you. I wanted to give a brief update on the TB puzzle. First, everyone did a great job and you have really impressed all of the scientists involved with the project. It is amazing for me to be part of a community that cares so much and is willing to work on projects that can help those in need. Mon, 08/15/2016 - 18:00 1 comment. Heads Up: Reply Slowdown Next Week. Tue, 08/02/2016 - 23:39 1 comment.

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Computational Chemical and Structural Biology. Jean and Alexander Heard library. TIPS - Next Generation Vaccines. Fun @ Meiler lab. The Bio Chemical Library (BCL). Fitting molecules in low resolution electron density maps. A growing technique in protein structure determination is cryo-electron microscopy. Cryo-EM provides low resolution electron density maps ( 8 Ångström) . As this data become more accurate and you can use this data not only to determine the overall structure of protei...Antibody structu...

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