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possibly maybe useful nuggets
me nugget: R package "fishdynr"
http://menugget.blogspot.com/2015/02/r-package-fishdynr.html
Possibly maybe useful nuggets. Sunday, February 1, 2015. Allows for the construction of some basic population dynamics models commonly used in fisheries science. Included are models of a single cohort, cohortSim. And a more complex iterative model that incorporates a stock-recruitment relationship, stockSim. Function of the devtools. Install github("fishdynr", "marchtaylor"). The above figure shows the output of the Beverton and Holt's (1957) yield-per-recruit model ( ypr. Script to reproduce the examples.
me nugget: September 2014
http://menugget.blogspot.com/2014_09_01_archive.html
Possibly maybe useful nuggets. Tuesday, September 30, 2014. Additional tips for structuring an individual-based model in R. I had a reader ask me recently to help understand how to modify the code of an individual-based model (IBM) that I posted a while back. Inds - grow.inds(inds). Inds - reproduce.inds(inds). Inds - kill.inds(inds). The example shown here is a modification. Of the genetic drift. Example that I showed before. To reproduce the example:. Posted by Marc in the box. Here is a summary from t...
me nugget: February 2015
http://menugget.blogspot.com/2015_02_01_archive.html
Possibly maybe useful nuggets. Sunday, February 1, 2015. Allows for the construction of some basic population dynamics models commonly used in fisheries science. Included are models of a single cohort, cohortSim. And a more complex iterative model that incorporates a stock-recruitment relationship, stockSim. Function of the devtools. Install github(fishdynr, marchtaylor). The above figure shows the output of the Beverton and Holts (1957) yield-per-recruit model ( ypr. And length at first capture ( Lcap.
me nugget: Exploring fishing harvest feedback policies in R using vector optimization
http://menugget.blogspot.com/2015/04/exploring-fishing-harvest-feedback.html
Possibly maybe useful nuggets. Thursday, April 2, 2015. Exploring fishing harvest feedback policies in R using vector optimization. Walters and Martell (2004, Section 3.2) present an interesting example of harvest feedback policy exploration using basic spreadsheet techniques and optimization procedures ( e.g. Solver. Values given a cost function (e.g. maximize the sum of: harvest yield, log-transformed yield, discounted yield):. Series are similar for maximizing yield or discounted yield (discount rate ...
me nugget: Maximal Information Coefficient (Part II)
http://menugget.blogspot.com/2014/09/maximal-information-coefficient-part-ii.html
Possibly maybe useful nuggets. Wednesday, September 17, 2014. Maximal Information Coefficient (Part II). A while back, I wrote a post. Albanese et al. 2013). Further documentation of the package can be found here: http:/ minepy.sourceforge.net/. I tried out the package on the baseball data set. Used in the original paper by Reshef et al. (2011), where a suite of variables are correlated against a baseball player's salary. The author's state in their paper:. More strongly tied to salary.". X - dat [.
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me nugget
Possibly maybe useful nuggets. Thursday, February 25, 2016. RSpectra: svds function now default method for sinkr: dineof. The summary blog post. Describing the RSpectra (formerly rARPACK) package made a convincing case for the improved decomposition speed of the svds function for partial SVD (Singular Value Decomposition) over several other R packages. Until now, the sinkr. Package has relied on irlba. While the effect looks dramatic above, it should be noted that the trailing vectors usually carry only ...
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