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Michael R. Thon | Bioinformatics and Programming

Bioinformatics and Programming

http://www.michaelrthon.com/

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Michael Thon

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Michael Thon

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Michael Thon

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Michael R. Thon | Bioinformatics and Programming | michaelrthon.com Reviews
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Bioinformatics and Programming
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5 bioinformatics tutorials
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9 by mike
10 and augustus
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Michael R. Thon | Bioinformatics and Programming | michaelrthon.com Reviews

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Bioinformatics and Programming

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1

InterProScan Plugin for Geneious | Michael R. Thon

http://michaelrthon.com/geneious-interproscan-plugin

Michael R. Thon. InterProScan Plugin for Geneious. The Geneious InterProScan Plugin enables you to run InterProScan from within the Geneious application. First, a few definitions. InterPro. Is a database of protein families and domains that was developed by the European Bioinformatics Institute. InterPro integrates many of the most popular protein family and domain databases such as PFAM and PRODOM together into one federated database. InterProScan. This plugin submits protein sequences to the InterProSc...

2

Augustus Plugin for Geneious | Michael R. Thon

http://michaelrthon.com/augustus-plugin-for-geneious

Michael R. Thon. Augustus Plugin for Geneious. The Augustus plugin for Geneious lets you run Augustus. An ab initio gene prediction program for eukaryotic DNA sequences. This plugin is in an early stage of development but the basic functionality is there: you can select a species from a list of pre-trained species and obtain a set of gene annotations for your genomic DNA sequences. You can follow the development on Bitbucket. 3 thoughts on “ Augustus Plugin for Geneious. August 11, 2014 at 11:14 pm.

3

RunIprScan | Michael R. Thon

http://michaelrthon.com/runiprscan

Michael R. Thon. RunIprScan is a command line utility for scanning protein sequences with InterProScan. You don’t need to install InterProScan to use it. The protein sequences are sent to the European Bioinformatics Institute’s web service where they are processed on the EBI’s compute cluster, returning the scan results in xml format and in a tab delimited table suitable for importing into a spreadsheet. Download now: RunIprScan-1.1.0. 100 Nov. 2, 2011. Initial release. Blog posts by category.

4

February | 2014 | Michael R. Thon

http://michaelrthon.com/2014/02

Michael R. Thon. Monthly Archives: February 2014. Geneious plugin sources are now on Bitbucket. I just released my source code for two Geneious plugins, InterProScan. This entry was posted in Uncategorized. February 8, 2014. Http:/ bioinformatica.vil.usal.es. Blog posts by category. Proudly powered by WordPress.

5

May | 2013 | Michael R. Thon

http://michaelrthon.com/2013/05

Michael R. Thon. Monthly Archives: May 2013. Reproducibility: Six red flags for suspect work : Nature : Nature Publishing Group. May 27, 2013. Simplify Your Life With an SSH Config File : Nerderati. May 1, 2013. Http:/ bioinformatica.vil.usal.es. Blog posts by category. Proudly powered by WordPress.

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