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mirtarbase.mbc.nctu.edu.tw

miRTarBase: the experimentally validated microRNA-target interactions database

MiRTarBase: the experimentally validated microRNA-target interactions database. 1 The word cloud of miRNA-disease information. Shows the miRNA was major related to the liver related disease such as hepatocellular carcinoma. 2 miRNA-Target site viewer in CLIP-seq data. Example: The miRNA, hsa-miR-15a-5p : VEGFA, target gene was display in 17 CLIP-seq (HITS-CLIP and PAR-CLIP) data sets generated by 6 independent studies.[ 17 datasets. 3 Clinical microRNA and gene expression profiles from TCGA. A computatio...

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miRTarBase: the experimentally validated microRNA-target interactions database | mirtarbase.mbc.nctu.edu.tw Reviews
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MiRTarBase: the experimentally validated microRNA-target interactions database. 1 The word cloud of miRNA-disease information. Shows the miRNA was major related to the liver related disease such as hepatocellular carcinoma. 2 miRNA-Target site viewer in CLIP-seq data. Example: The miRNA, hsa-miR-15a-5p : VEGFA, target gene was display in 17 CLIP-seq (HITS-CLIP and PAR-CLIP) data sets generated by 6 independent studies.[ 17 datasets. 3 Clinical microRNA and gene expression profiles from TCGA. A computatio...
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1 browse
2 statistics
3 download
4 major improvments
5 features
6 example hsa mir 122 5p
7 clip seq viewer
8 citing mirtarbase
9 subscription
10 current curation
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miRTarBase: the experimentally validated microRNA-target interactions database | mirtarbase.mbc.nctu.edu.tw Reviews

https://mirtarbase.mbc.nctu.edu.tw

MiRTarBase: the experimentally validated microRNA-target interactions database. 1 The word cloud of miRNA-disease information. Shows the miRNA was major related to the liver related disease such as hepatocellular carcinoma. 2 miRNA-Target site viewer in CLIP-seq data. Example: The miRNA, hsa-miR-15a-5p : VEGFA, target gene was display in 17 CLIP-seq (HITS-CLIP and PAR-CLIP) data sets generated by 6 independent studies.[ 17 datasets. 3 Clinical microRNA and gene expression profiles from TCGA. A computatio...

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mirtarbase.mbc.nctu.edu.tw mirtarbase.mbc.nctu.edu.tw
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Browser By Species...

http://mirtarbase.mbc.nctu.edu.tw/php/browse.php

Cattle; 242 miRNA-target interactions between 21 miRNAs and 111 target genes). Human; 324,219 miRNA-target interactions between 2,619 miRNAs and 14,884 target genes). Mouse; 41,588 miRNA-target interactions between 1,885 miRNAs and 7,147 target genes). Sheep; 3 miRNA-target interactions between 1 miRNAs and 3 target genes). Rat; 488 miRNA-target interactions between 150 miRNAs and 249 target genes). Zebrafish; 135 miRNA-target interactions between 39 miRNAs and 98 target genes). Vesicular stomatitis Indi...

2

Download Page

http://mirtarbase.mbc.nctu.edu.tw/php/download.php

All published miRNA target interaction data in EXCEL format. MTI PubMed Abstract Manually Curation Corpus. Manually curation of miRNA and target genes, and their relations in PubMed abstracts README. Vesicular stomatitis Indiana virus. Catalog by Experimental Evidences. MiRTarBase SE WR.xls. Supported by strong experimental evidences (Reporter assay or Western blot). MiRTarBase SE W.xls. Supported by strong experimental evidences (Western blot). MiRTarBase SE R.xls. MiRTarBase WE MP.xls.

3

Statistics of miRTarBase

http://mirtarbase.mbc.nctu.edu.tw/php/statistics.php

Statistics of miRNA-target interactions in miRTarBase. No of miRNA-target interactions (MTIs). No of target genes. No of MTIs are validated by.

4

miRTarBase: the experimentally validated microRNA-target interactions database

http://mirtarbase.mbc.nctu.edu.tw/index.php

MiRTarBase: the experimentally validated microRNA-target interactions database. 1 The word cloud of miRNA-disease information. Shows the miRNA was major related to the liver related disease such as hepatocellular carcinoma. 2 miRNA-Target site viewer in CLIP-seq data. Example: The miRNA, hsa-miR-15a-5p : VEGFA, target gene was display in 17 CLIP-seq (HITS-CLIP and PAR-CLIP) data sets generated by 6 independent studies.[ 17 datasets. 3 Clinical microRNA and gene expression profiles from TCGA. A computatio...

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rnacentral.org rnacentral.org

miRBase Expert Database

http://www.rnacentral.org/expert-database/mirbase

Your query is too short. Your query is too long. Is a database of published miRNA sequences and annotations that provides a centralised system for assigning names to miRNA genes. Distinct sequences from 27. Organisms contributed to RNAcentral. The shortest sequence has 16. Nucleotides, the longest 1,451. The average length is 41. 21 (a subset of species). Browse all miRBase sequences. MiRBase: integrating microRNA annotation and deep-sequencing data. Click the graph to search by sequence length. Result&#...

rnacentral.org rnacentral.org

tmRNA Website Expert Database

http://www.rnacentral.org/expert-database/tmrna-website

Your query is too short. Your query is too long. TmRNA Website Expert Database. Contains predicted tmRNA sequences from RefSeq prokaryotic genomes, plasmids and phages. Distinct sequences from 7,563. Organisms contributed to RNAcentral. The shortest sequence has 23. Nucleotides, the longest 644. The average length is 334. Browse all tmRNA Website sequences. The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts. Click the graph to search by sequence length. Result.entries...

rnacentral.org rnacentral.org

Rfam Expert Database

http://www.rnacentral.org/expert-database/rfam

Your query is too short. Your query is too long. Is a collection of non-coding RNA families represented by manually curated sequence alignments, consensus secondary structures, and predicted homologues. Distinct sequences from 430,777. Organisms contributed to RNAcentral. The shortest sequence has 24. Nucleotides, the longest 10,387. The average length is 430. Browse all Rfam sequences. Rfam 12.0: updates to the RNA families database. Rfam 11.0: 10 years of RNA families. Try reloading the page. Powered b...

aura.science.unitn.it aura.science.unitn.it

AURA - Atlas of UTR Regulatory Activity

http://aura.science.unitn.it/cite

How to cite AURA. Please cite AURA in your publications as follows:. Dassi E, Re A, Leo S, Tebaldi T, Pasini L, Peroni D and Quattrone A. (2014). AURA 2: Empowering discovery of post-transcriptional networks. The paper is open access and can be downloaded here. AREsite: a database for the comprehensive investigation of AU-rich elements. A compendium of RNA-binding motifs for decoding gene regulation. COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer.

rnacentral.org rnacentral.org

lncRNAdb Expert Database

http://www.rnacentral.org/expert-database/lncrnadb

Your query is too short. Your query is too long. Is a database providing comprehensive annotations of eukaryotic long non-coding RNAs (lncRNAs). Distinct sequences from 10. Organisms contributed to RNAcentral. The shortest sequence has 61. Nucleotides, the longest 32,753. The average length is 3,085. Browse all lncRNAdb sequences. LncRNAdb: a reference database for long noncoding RNAs. Due to the small number of entries, a list of all lincRNAdb entries is provided instead of a sequence distribution graph.

ncg.kcl.ac.uk ncg.kcl.ac.uk

NCG Help

http://ncg.kcl.ac.uk/help.php

NCG collects 1,571 cancer genes. Cancer Gene Census (CGC). Screenings of predefined gene panels. Whole-exome sequencing (WES) of cancer samples. Whole-genome sequencing (WGS) of cancer samples. For each cancer gene, NCG provides information on:. From the homepage the user may retrieve the information from the database in several ways:. Retrieve gene information for a single gene or a user-defined list of genes;. Browse and retrieve the genes related to study of interest;. Known Cancer Genes;. The filters...

toppgene.cchmc.org toppgene.cchmc.org

Links

https://toppgene.cchmc.org/navigation/links.jsp

A one-stop portal for gene list enrichment analysis and candidate gene prioritization. Based on functional annotations and protein interactions network. ToppGene Suite would not be possible without the efforts and contributions to the scientific community of the following institutions. A database for gene annotations. European Molecular Biology Laboratory. The Gene Ontology project provides a controlled vocabulary to describe gene and gene product attributes in any organism. GWAS Central (previously the ...

genetrail2.bioinf.uni-sb.de genetrail2.bioinf.uni-sb.de

GeneTrail2

http://genetrail2.bioinf.uni-sb.de/start.html

Https:/ genetrail2.bioinf.uni-sb.de. Https:/ regulatortrail.bioinf.uni-sb.de. Ötzi the Iceman (ORA). Integrative / Comparative analysis. Wilms' tumors (mRNA miRNA). Statistical analysis of molecular signatures. Please insert your username or email address. Data and perform enrichment analysis based on gene sets derived from popular databases like GO. Data and perform enrichment analysis based on protein datasets like SMPDB. Or map proteins to corresponding genes and perform a gene set analysis.

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miRTarBase: the experimentally validated microRNA-target interactions database

MiRTarBase: the experimentally validated microRNA-target interactions database. 1 The word cloud of miRNA-disease information. Shows the miRNA was major related to the liver related disease such as hepatocellular carcinoma. 2 miRNA-Target site viewer in CLIP-seq data. Example: The miRNA, hsa-miR-15a-5p : VEGFA, target gene was display in 17 CLIP-seq (HITS-CLIP and PAR-CLIP) data sets generated by 6 independent studies.[ 17 datasets. 3 Clinical microRNA and gene expression profiles from TCGA. A computatio...

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