baliga.systemsbiology.net
Baliga Lab Personnel | Baliga Lab at Institute for Systems Biology
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Skip to main content. All e-mail addresses are @systemsbiology.org. University of Massachusetts at Amherst. MSc, Marine Biotechnology. Goa University, India. David J. Reiss. Anne W. Thompson. Adrián López García de Lomana. Assistant Professor, NYU. Email: bonneau(at)cs.nyu.edu. Marc T. Facciotti. Assistant Professor, UCDavis. Assistant Professor, Duke. Senior Scientist, NIHS, Japan. Email: masumura(at)nihs.go.jp. Assistant Professor, University of Sao Paulo. Univ of Arizona- School of Medicine 2009.
baliga.systemsbiology.net
Resources for exploring EGRIN for oxidative stress | Baliga Lab at Institute for Systems Biology
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Skip to main content. Resources for exploring EGRIN for oxidative stress. Oxidative stress (OS) is a condition reached when certain environmental stresses or genetic defects cause the production of ROS to exceed the management capacity. EGRIN. Is a multi-tiered systems scale program for OS management that was constructed using network inference algorithms cMonkey and Inferelator. You can find details of how this was done in the following manuscript:. Can be accessed in 5 formats:. Data Matrix Viewer (DMV).
baliga.systemsbiology.net
Halophiles | Baliga Lab at Institute for Systems Biology
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Skip to main content. Research in our lab is focused on two halophilic archaeal - Halobacterium salinarum NRC-1. And Haloarcula marismortui ATCC 43049. To facilitate these studies we have determined the complete genome sequences for both of these organisms and have developed an array of genome scale strategies tailored to analyzing their biology. Using these powerful tools we are applying systems approaches. There are several reasons that influenced our choice of halophilic archaea as our model system(s)...
baliga.systemsbiology.net
Systems Approach | Baliga Lab at Institute for Systems Biology
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Skip to main content. The ultimate goal is to integrate and process all these measurements to formulate mathematical models. That recapitulate all previous observations and predict new behavior in face of novel environmental perturbations. In a systems approach biological questions. That extract meaningful biological insights that yields a systems level understanding of cellular responses. Marine Systems: from single cells to global biogeochemical cycles. P furiosus DSM 3638.
baliga.systemsbiology.net
Model Organisms | Baliga Lab at Institute for Systems Biology
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Skip to main content. Our choice of model organisms is dictated by the biological question being investigated. Accordingly, research in our laboratory is conducted on a slew of model organisms including halophilic archaea. Hypersaline algae, oceanic diatoms, methanogens. Halobacterium species NRC-1 Genome. P furiosus DSM 3638. Baliga Lab Institute for Systems Biology.
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Data Download | Baliga Lab at Institute for Systems Biology
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Skip to main content. Halobacterium species NRC-1 Genome. RAW ANNOTATION INPUT DATA. The following files are data products from protein domain matching software. The files were loaded into the database and used in combination to annotate the proteins. Rosetta results (Mammoth Summary). The following files contain gene names, start/stop coordinates, and directional orientation. Halobacterium NRC-1 Genome Map. Spotted Expression Microarray Platform. Protein - DNA interactions (chIP-chip).
baliga.systemsbiology.net
EGRIN (Environment And Gene Regulatory Influence Network) | Baliga Lab at Institute for Systems Biology
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Skip to main content. EGRIN (Environment And Gene Regulatory Influence Network). EGRIN is a product of an integrated systems analysis of transcriptional response of. To diverse enviromental and genetic insults. The network represents a predictive model for transcriptional control of physiology encoded by 1,929 of the total 2,400 genes in this organism. Details on the construction of analyses of this network are described in the paper published in. EGRIN can be accessed in 5 formats:. P furiosus DSM 3638.
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Haloarcula marismortui Genome | Baliga Lab at Institute for Systems Biology
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Skip to main content. Compare Haloarcula and Halobacterium Genomes. Browse Domain Search Results. Explore Data with the Haloarcula Gaggle. Genome sequence of Haloarcula marismortui: A halophilic archaeon from the Dead Sea. Baliga, N.S., R. Bonneau, M.T. Facciotti, M. Pan, G. Glusman, E.W. Deutsch, P. Shannon, Y. Chiu, R.S. Weng, R.R. Gan, P. Hung, S.V. Date, E. Marcotte, L. Hood, and W.V. Ng. Genome Res. 2004 14: 2221-2234. P furiosus DSM 3638. Baliga Lab Institute for Systems Biology.
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Hyperthermophiles | Baliga Lab at Institute for Systems Biology
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Skip to main content. Pyrococcus furiosus DSM 3638. Pyrococcus furiosus is an extremophilic species of Archaea. It is notable for having an optimum growth temperature of 100°C (a temperature which would destroy most living organisms), and for being one of the few organisms identified as possessing enzymes containing tungsten, an element rarely found in biological molecules. P furiosus DSM 3638. Baliga Lab Institute for Systems Biology.
