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Mobley Lab, UCI – Free energy methods for pharmaceutical drug discoveryFree energy methods for pharmaceutical drug discovery
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Free energy methods for pharmaceutical drug discovery
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David Mobley
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Mobley Lab, UCI – Free energy methods for pharmaceutical drug discovery | mobleylab.org Reviews
https://mobleylab.org
Free energy methods for pharmaceutical drug discovery
Mobley Lab Resources - Pharmaceutical Sciences - University of California, Irvine
https://mobleylab.org/resources.html
Resources: Lab Facilities, Useful Information, Etc. This page is still under construction.). Automatic setup of relative free energy calculations in GROMACS. An open tool implementing some recommended practices for analyzing alchemical free energy calculations. Adjusts topology files with GAFF to have GAFF-DC charges. Tools for Small Molecules, Antechamber, OpenMM, and More. Tools for setting up arbitrary (currently non-water) solute-solvent mixtures for simulation in GROMACS or AMBER formats. Lab facili...
Mobley Lab - Pharm. Sci. - University of California, Irvine
https://mobleylab.org/index.html
David L. Mobley. PhD, UC Davis 2004. BS, UC Davis 2000. Phone: 949.385.2436. Office: 3134B Nat. Sci. I. Sensitivity in binding free energies due to protein reorganization", in J. Chem. Theory. Comput. Calculating Partition Coefficients of Small Molecules in Octanol/Water and Cyclohexane/Water", in J. Chem. Theory. Comput. See more publications ». One major emphasis is binding prediction. Free energy techniques for predicting binding affinities using molecular simulations. (See alchemistry.org. Version of...
Publications - Mobley Lab - Pharmaceutical Sciences - University of California, Irvine
https://mobleylab.org/publications.html
N M Lim, L. Wang, R. Abel, D. L. Mobley, "Sensitivity in binding free energies due to protein reorganization", in J. Chem. Theory. Comput. C C Bannan, G. Calabro, D. Y. Kyu, D. L. Mobley, "Calculating Partition Coefficients of Small Molecules in Octanol/Water and Cyclohexane/Water", in J. Chem. Theory. Comput. D L Mobley and D. M. Zuckerman, "A proposal for regularly updated review/survey articles: `Perpetual reviews'", white paper, (2015). ( arXiv. 29(11):1007-1014 (2015). ( DOI. A S Paluch, S. Para...
Mobley Lab Funding - Pharm. Sci. - University of California, Irvine
https://mobleylab.org/funding.html
We are thankful for financial support from the University of California, Irvine, the National Institutes of Health (1R15GM096257-01A1 and 1R01GM108889-01), and the National Science Foundation (NSF CAREER Award CHE 1352608). Computer Time and Other Resources. We are thankful to NSF CHE-0840513 for support of the UCI GreenPlanet computer cluster. Previous computational support includes the Loiuisiana Optical Network Initiative (and the Louisiana Board of Regents, LEQSF(2007-12)-ENH-PKSFI-PRS-01) for nu...
Mobley Lab - Pharmaceutical Sciences - University of California, Irvine
https://mobleylab.org/people.html
Dr David L. Mobley. The research group as of June 2016, consists of one postdoc (Dr. Gaetano Calabro), eight Ph.D. students (Nathan Lim, Camila Zanette, Guilherme Matos, Caitlin Bannan, Sam Gill, Hanh Nguyen, Victoria Lim, and Kalistyn Burley), and three undergraduates (Daisy Kyu, Nam Thi, and Linh Nguyen). Information on the individual group members and their projects can be found at right. The Mobley lab is located in 3110 Natural Sciences I on the main campus at UCI. Vivian Jaber, a former undergradua...
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About the Editors - AlchemistryWiki
http://www.alchemistry.org/wiki/About_the_Editors
Michael R Shirts - an assistant professor at The University of Virginia. In the department of chemical engineering. He has done a number of studies on free energy methods and calculation: see Michael Shirts' group page. Levi Naden - a graduate student in the Shirts Group. Working on free energy calculation methods. An assistant professor at University of California-Irvine. John D Chodera - an Assistant Member at the Memorial Sloan-Kettering Cancer Center. Free Energy References (external).
Links — Chodera lab // MSKCC
http://www.choderalab.org/links
Chodera lab / MSKCC. Chodera lab / MSKCC. Chodera lab / MSKCC. Changing drug discovery one ratio of partition functions at a time. Chodera lab / MSKCC. Collaborators and useful links. Alchemical free energy calculations. Information resource for alchemical free energy calculations. Michael R. Shirts, Department of Chemical Engineering, University of Virginia. David L. Mobley, Pharmaceutical Sciences, University of California, Irvine. Vijay S. Pande, Department of Chemistry, Stanford University.
Announcements Archives
http://pharmsci.uci.edu/undergraduate/AnnouncementsArchives.php
What are the Pharmaceutical Sciences? A Short History of Drug Discovery. Medicinal Chemistry and Pharmacology (MCP) Program. MCP Admissions and Application. Pharmacological Sciences PhD Program. Dr Weian Zhao, pharm sci Assistant Professor, wins the coveted. NIH: new innovator award! Congratulations to Dr. Weian Zhao,. Page for the full article! Pharm Sci Associate Professor, Dr. Mobley, receives prestigious award from the National Science Foundation! Congratulations to Dr. David Mobley. Offered Pharm Sc...
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Mobley Lab, UCI – Free energy methods for pharmaceutical drug discovery
Dr David L. Mobley. Nathan M. Lim. Caitlin C. Bannan. Mobley Lab, UCI. Free energy methods for pharmaceutical drug discovery. Open Force Field Consortium: Escaping atom types using direct chemical perception with SMIRNOFF v0.1. Binding modes of ligands using enhanced sampling (BLUES). Synthesis facilitates an understanding of the structural basis for translation inhibition by the lissoclimides. I’m behind on updates,but there’s a lot of great news recently! Here are some highlights. Lab news and events:.
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