vwxynot.blogspot.com
VWXYNot?: HOUSTON, WE HAVE GONE FOR LUNCH!!!
http://vwxynot.blogspot.com/2010/12/houston-we-have-gone-for-lunch.html
It's a fool who plays it cool by making his world a little colder. Mostly silly, with a 20% chance of science. Thursday, December 9, 2010. HOUSTON, WE HAVE GONE FOR LUNCH! HOUSTON, WE ARE GO FOR LAUNCH! I've always wanted to say that). This will be my last post on this blog. I'm not quitting, I'm just relocating! My new blog is here. And it's part of a brand spanking new blog network called Occam's Typewriter. So, for the change-averse among you, what should you expect to find over there? I'll keep this ...
compbio.bccrc.ca
Publications | Shah Lab for Computational Cancer Biology
http://compbio.bccrc.ca/publications
Shah Lab for Computational Cancer Biology. Bioinformatics for Cancer Genomics. DeFuse: gene fusion discovery using RNA-Seq. See a complete list of the lab’s publications in Google Scholar. Last updated on July 19, 2013 @2:13 am. Open Source Genotyper Software: computational cancer biology in the digital age. Scientists map the spread of deadliest ovarian cancer. New paper: Systematic analysis of mutations impacting gene expression. Pubmed Feed – Sohrab Shah.
compbio.bccrc.ca
Personnel | Shah Lab for Computational Cancer Biology
http://compbio.bccrc.ca/people
Shah Lab for Computational Cancer Biology. Bioinformatics for Cancer Genomics. DeFuse: gene fusion discovery using RNA-Seq. Dr Camila de Souza (co-supervised by Dr. Jennifer Bryan and Dr. Nancy Heckman). Jiarui Ding, UBC Computer Science. Adi Steif (co-supervised by Dr. Samuel Aparicio). Allen Zhang, MD/PhD student (co-supervised by Dr. Wyeth Wasserman). Mirela Andronescu, Bioinformatics Scientist. Mohamed Radhouane Aniba, Bioinformatician. Diljot Grewal, Junior software developer. Kenneth Wing Cheung Lui.
compbio.bccrc.ca
TITAN published in Genome Research | Shah Lab for Computational Cancer Biology
http://compbio.bccrc.ca/2014/07/30/titan
Shah Lab for Computational Cancer Biology. Bioinformatics for Cancer Genomics. DeFuse: gene fusion discovery using RNA-Seq. TITAN published in Genome Research. TITAN published in Genome Research. July 30, 2014. We have developed a new tool for inferring the copy number from mixtures of clonal cell populations from whole genome sequencing of tumours. TITAN. TITAN: Inference of copy number architectures in clonal cell populations from tumor whole genome sequence data. Tagged with cancer research. BC Cancer...
compbio.bccrc.ca
Teaching | Shah Lab for Computational Cancer Biology
http://compbio.bccrc.ca/teaching
Shah Lab for Computational Cancer Biology. Bioinformatics for Cancer Genomics. DeFuse: gene fusion discovery using RNA-Seq. Here is a list of courses and workshops I teach plus links to slide decks and other resources in the field of computational and cancer genomics. Canadian Bioinformatics Workshops Bioinformatics for Cancer Genomics. Last updated on January 7, 2015 @2:23 pm. Open Source Genotyper Software: computational cancer biology in the digital age. Pubmed Feed – Sohrab Shah.
compbio.bccrc.ca
PostPy | Shah Lab for Computational Cancer Biology
http://compbio.bccrc.ca/software/postpy
Shah Lab for Computational Cancer Biology. Bioinformatics for Cancer Genomics. DeFuse: gene fusion discovery using RNA-Seq. Is a set of tools that help you post process PyClone results. This package contains three main tools. CI filter.py. For calculating the quantile-based credible intervals for the prevalence of each SNV, pyclone files updater.py. For removing the SNVs with wide credible intervals and re-clustering the remaining SNVs, and interval analyser.py. Path to the analysis results. CI filter...
vwxynot.blogspot.com
VWXYNot?: CurlyLocks and the Six Bear Stories
http://vwxynot.blogspot.com/2008/08/curlylocks-and-six-bear-stories.html
It's a fool who plays it cool by making his world a little colder. Mostly silly, with a 20% chance of science. Thursday, August 14, 2008. CurlyLocks and the Six Bear Stories. Or: If you go down to the woods today, you're in for a big surprise. As I've mentioned before, I am terrified of bears. 1 I'd read a bit about bears before I moved here. My Dad had also passed on the advice he'd been given by a park ranger in the Alberta Rockies:. Dad: "How can you tell? Dad (unwitting straight man): "How so? Canadi...
vwxynot.blogspot.com
VWXYNot?: Note to self: leave better notes to self
http://vwxynot.blogspot.com/2010/03/note-to-self-leave-better-notes-to-self.html
It's a fool who plays it cool by making his world a little colder. Mostly silly, with a 20% chance of science. Monday, March 1, 2010. Note to self: leave better notes to self. I'm currently (intermittently, half-heartedly) tidying my inbox and desk after the latest round of grant applications. In the process, I uncovered a note in my own handwriting on the pad of post-its that I use for jotting down phone messages:. Same old same old. Who the hell is Louise Golbey? On the "BBC Introducing". March 1, 2010...
vwxynot.blogspot.com
VWXYNot?: First Annual VWXYNot? Readers' Choice Comment of the Year* Award!
http://vwxynot.blogspot.com/2009/12/first-annual-vwxynot-readers-choice.html
It's a fool who plays it cool by making his world a little colder. Mostly silly, with a 20% chance of science. Saturday, December 12, 2009. Readers' Choice Comment of the Year* Award! I'm feeling much warmer and fuzzier than normal about the whole thing this year, possibly because I essentially missed Christmas Day last time around (stoopid norovirus). And what else makes me feel all warm and fuzzy? Readers' Choice Comment of the Year* Award! Please vote using the poll at the top of the right sidebar.
vwxynot.blogspot.com
VWXYNot?: We have a winner!
http://vwxynot.blogspot.com/2010/01/we-have-winner.html
It's a fool who plays it cool by making his world a little colder. Mostly silly, with a 20% chance of science. Monday, January 4, 2010. We have a winner! Congratulations to Massimo for winning the First Annual VWXYNot? Readers' Choice Comment of the Year Award! Here's your virtual trophy that you may display on your blog if you choose:. And please let me know what you want from Amazon (up to CAD30 value), and where I should send it! The final scores were as follows:. 1 Massimo: Moose: 17 votes. Deaths...
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