motifmap.ics.uci.edu

Motifmap

MotifMap: genome-wide maps of regulatory elements. System provides comprehensive maps of candidate regulatory elements encoded in the genomes of model species using databases of transcription factor binding motifs, refined genome alignments, and a comparative genomic statistical approach- Bayesian Branch Length Score. Allows users to select a transcription factor, view its binding sequence logo, and list its genome-wide putative binding sites. The code and MotifMap data are freely available for academic ...

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Motifmap | motifmap.ics.uci.edu Reviews

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MotifMap: genome-wide maps of regulatory elements. System provides comprehensive maps of candidate regulatory elements encoded in the genomes of model species using databases of transcription factor binding motifs, refined genome alignments, and a comparative genomic statistical approach- Bayesian Branch Length Score. Allows users to select a transcription factor, view its binding sequence logo, and list its genome-wide putative binding sites. The code and MotifMap data are freely available for academic ...

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1 motif search

2 gene search

3 snper

4 the motifmap

5 getting started

6 motifmap rna portal

7 bbls code

8 available species

9 species

10 human

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motif search,gene search,snper,the motifmap,getting started,motifmap rna portal,bbls code,available species,species,human,mouse,yeast,worm,build,saccer2,alignment,multiz28way placental,multiz46way placental,multiz30way,multiz15way flies only,multiz7way

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Motifmap | motifmap.ics.uci.edu Reviews

https://motifmap.ics.uci.edu

MotifMap: genome-wide maps of regulatory elements. System provides comprehensive maps of candidate regulatory elements encoded in the genomes of model species using databases of transcription factor binding motifs, refined genome alignments, and a comparative genomic statistical approach- Bayesian Branch Length Score. Allows users to select a transcription factor, view its binding sequence logo, and list its genome-wide putative binding sites. The code and MotifMap data are freely available for academic ...

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kennydaily.com

Kenneth M. Daily @ Sage Bionetworks

http://www.kennydaily.com/about.html

I am a Senior Scientist in the data science group at Sage Bionetworks. I performed a postdoctoral fellowship in the Dermatology Branch of the Center for Cancer Research of the National Cancer Institute. I work in the Lab of Dr. Isaac Brownell. My focus is on genomic analysis of Merkel cell carcinoma. From the NCI in 2011. I earned my Ph.D. in Computer Science. At the University of California, Irvine. Working with Professors Pierre Baldi. Working with Predrag Radivojac.

kennydaily.net

Kenneth M. Daily @ Sage Bionetworks

http://www.kennydaily.net/about.html

I am a Senior Scientist in the data science group at Sage Bionetworks. I performed a postdoctoral fellowship in the Dermatology Branch of the Center for Cancer Research of the National Cancer Institute. I work in the Lab of Dr. Isaac Brownell. My focus is on genomic analysis of Merkel cell carcinoma. From the NCI in 2011. I earned my Ph.D. in Computer Science. At the University of California, Irvine. Working with Professors Pierre Baldi. Working with Predrag Radivojac.

cbcl.ics.uci.edu

software – Computational Biology and Computational Learning -- CBCL

https://cbcl.ics.uci.edu/doku.php/software

Computational Biology and Computational Learning - CBCL. CBCL Lab @ UCI. Most software published by our group is also available on github.com/uci-cbcl. Hobbes is a tool for very fast, very accurate short-read sequence alignment. Hobbes has its own homepage. Parallel genome assembly using Hyracks, available at https:/ github.com/uci-cbcl/genomix. PyLOH is a tool for discovering copy number variations in cancer genomes. PyLOH is available at https:/ github.com/uci-cbcl/PyLOH. Site-specific phylogenetic ana...

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motifmap.ics.uci.edu

Motifmap

MotifMap: genome-wide maps of regulatory elements. System provides comprehensive maps of candidate regulatory elements encoded in the genomes of model species using databases of transcription factor binding motifs, refined genome alignments, and a comparative genomic statistical approach- Bayesian Branch Length Score. Allows users to select a transcription factor, view its binding sequence logo, and list its genome-wide putative binding sites. The code and MotifMap data are freely available for academic ...

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