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MetaPlab: Virtual Laboratory

MetaPlab virtual laboratory is a software for modeling biological systems by MP systems

http://mplab.sci.univr.it/

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MetaPlab: Virtual Laboratory | mplab.sci.univr.it Reviews
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MetaPlab virtual laboratory is a software for modeling biological systems by MP systems
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MetaPlab: Virtual Laboratory | mplab.sci.univr.it Reviews

https://mplab.sci.univr.it

MetaPlab virtual laboratory is a software for modeling biological systems by MP systems

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1

MetaPlab: Downloads

http://mplab.sci.univr.it/downloads/Downloads.php

MetaPlab release 1.3. How to get start with MetaPlab:. Once downloaded, the zip file has to be uncompressed. Afterward, enter the uncompressed directory, called MetaPlab-dist, and launch the file MetaPlab.jar. More details on the installation and the start of MetaPlab can be found in bundled. Compiling instructions can be found in the bundled readme file. GNU General Public Licence. Windows 8/7/Vista/XP/2000/98, Linux, MacOS, Java jre1.6 or subsequent. Download Release 1.2. GNU General Public Licence.

2

MetaPlab: News

http://mplab.sci.univr.it/news/News.php

The MetaPlab virtual laboratory is presented, for the first time, at the 9th Workshop on Membrane Computing, WMC9, Edinburgh (UK), July 28-31, 2008.

3

MetaPlab: Team

http://mplab.sci.univr.it/team/Team.php

Models of natural computing (MNC) group. Vincenzo.manca at univr.it. Giuditta.franco at univr.it. Alberto.castellini at univr.it. Alberto Castellini ( http:/ www.albertocastellini.tk. Graduated in Computer Science in 2006 and earned his PhD in Computer Science, with a dissertation titled. Algorithms and Software for Biological MP Modeling by Statistical and Optimization Techniques. At the University of Verona. He is currently a postdoc research associate at the. Center for BioMedical Computing.

4

MetaPlab: Tutorials

http://mplab.sci.univr.it/tutorials/Tutorials.php

Tutorials about MetaPlab release 1.3. In this tutorial the procedure for developing and testing new plugins is explained. MetaPlab: A Computational Framework for Metabolic P Systems. The first publication about MetaPlab. It has been presented at WMC9 (Edinburgh, July 2008). In this paper MP systems formalism is described and the main features of MetaPlab are introduced. MetaPlab 1.3 official guide. A thorough step-by-step guide of the main functionalities of MetaPlab. MetaPlab 1.2 official guide. In this...

5

MetaPlab: Publications

http://mplab.sci.univr.it/publications/Publications.php

Bianco L, Castellini (2008) A. Psim: A computational platform for metabolic P systems. LNCS 4860, 1-20, Springer 2007. Bianco L, Fontana F, Franco G, Manca V. (2006) P systems for biological dynamics. In Applications of Membrane Computing, Chapter 2, G. Ciobanu, G. Paun, M. J. Perez-Jimenez (eds). Springer, 2006. Bianco L. (2008) Membrane models of biological systems. Ph.D. Thesis, University of Verona, April, 2007. Fontana F, Manca V. (2008) Predator-prey dynamics in P systems ruled by metabolic alg...

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Center for BioMedical Computing

http://www.cbmc.it/people/People.php

Giorgio.berton at univr.it. Manuele.bicego at univr.it. Giacomina Bruttomesso (Administrative assistant). Giacomina.bruttomesso at univr.it. Prof Mario Rosario Buffelli. Mariobuffelli at univr.it. Alberto.castellini at univr.it. Alberto Castellini ( http:/ www.albertocastellini.tk. Graduated in Computer Science in 2006 and earned his PhD in Computer Science, with a dissertation titled ". Algorithms and Software for Biological MP Modeling by Statistical and Optimization Techniques. Francesco Maria Cirigli...

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Center for BioMedical Computing

http://www.cbmc.it/links/Links.php

Studies biological phenomena in a systemic perspective. According to this perspective, properties and behaviors of organisms, at each level, are analyzed in terms of mathematical systems. These systems, although based on physical, chemical, and biological laws, obey to internal logics which are, very often, independent from the specific reality of their components. The mathematical and computational analyses of such systems, with their. A genome analysis based on repeat sharing gene net. A comprehensive ...

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MetaPlab: Team

http://mplab.scienze.univr.it/team/Team.php

Models of natural computing (MNC) group. Vincenzo.manca at univr.it. Giuditta.franco at univr.it. Alberto.castellini at univr.it. Alberto Castellini ( http:/ www.albertocastellini.tk. Graduated in Computer Science in 2006 and earned his PhD in Computer Science, with a dissertation titled. Algorithms and Software for Biological MP Modeling by Statistical and Optimization Techniques. At the University of Verona. He is currently a postdoc research associate at the. Center for BioMedical Computing.

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Center for BioMedical Computing

http://www.cbmc.it/projects/Projects.php

Tech Service: THE LIST OF SERVICES DELIVERED BY CBMC (SEE LINK FOR DETAILS). Metabolomics in Panthetine pharmacology. Phosphonetwork analysis of B-chronic lymphocytic leukemia (B-CLL). Interference - Virtual experimental topological network analysis. HOMECAT for consensus homology mapping to integrate knowledge and functional genomic data. Prof Mario Rosario Buffelli. Alzheimer Disease Pathological Processes Investigation By Systems Biology Approach. Prof Mario Rosario Buffelli. This project is aimed at ...

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Center for BioMedical Computing

http://www.cbmc.it/software/Software.php

Modeling time-dependent transcription effects of HER2 oncogene in breast cancer cell-matrix adhesion. This is a set of MATLAB scripts and functions reproducing all the modeling steps reported in the paper: "Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion". Experimental RAW data are provided together with the software. GNU Lesser General Public License. GNU Lesser General Public License. GNU General Public Licence. MetaP...

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MetaPlab: Virtual Laboratory

Is a virtual laboratory which aims at assisting modellers both to understand the internal mechanisms of biological systems and to forecast, in silico, their response to external stimuli, environmental condition alterations or structural changes. MetaPlab framework is based on a. Which enables to design and manage biological models, and an. Extensible set of plugins. By which MP models can be generated, optimized, simulated and analysed. Alberto.castellini at univr.it.

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MetaPlab: Virtual Laboratory

Is a virtual laboratory which aims at assisting modellers both to understand the internal mechanisms of biological systems and to forecast, in silico, their response to external stimuli, environmental condition alterations or structural changes. MetaPlab framework is based on a. Which enables to design and manage biological models, and an. Extensible set of plugins. By which MP models can be generated, optimized, simulated and analysed. Alberto.castellini at univr.it.

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