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Medicago truncatula Hapmap ProjectMedicago truncatula Hapmap Project
http://mtweb1.cfans.umn.edu/
Medicago truncatula Hapmap Project
http://mtweb1.cfans.umn.edu/
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Medicago truncatula Hapmap Project | mtweb1.cfans.umn.edu Reviews
https://mtweb1.cfans.umn.edu
Medicago truncatula Hapmap Project
mtweb1.cfans.umn.edu
Downloads Overview
http://mtweb1.cfans.umn.edu/downloads/overview
M truncatula de novo. SNPs and related information for 288 M. truncatula. Accessions. SNP calls are based on the M. truncatula. V40 reference genome. Gene context information is based on the reference genome annotation Mt4.0. Assembly for HM340 / R108, including previous and current versions, are available here. Cultivated Alfalfa at the Diploid Level (CADL) Assembly. Assembly of Cultivated Alfalfa at the Diploid Level (CADL) is available for download here. M truncatula de novo. And 12 S. medicae.
External Resources
http://mtweb1.cfans.umn.edu/resources/external
M truncatula de novo. National Science Foundation program to support basic research in plant genomics. 1001 Genomes (Arabidopsis Genetic Variation). Project to determine genetic variations in 1001 strains of Arabidopsis thaliana. Genome Project @ JCVI. Legume Information Service (LIS). USDA Resources for the legume research community. Medicago Handbook @ NOBLE foundation. A bioinformatics gateway towards integrative legume biology. Site hosted by: Nevin Young's Lab at University of Minnesota.
Tools Overview
http://mtweb1.cfans.umn.edu/tools/overview
M truncatula de novo. SNPs and related information for 288 Medicago truncatula. Accessions. SNP calls are based on the M. truncatula. V40 reference genome. Gene context information is based on the reference genome annotation Mt4.0v1. Interface to NCBI BLAST v2.2.27 for searching against Mt4.0 or Mt3.5v5 assemblies, CDS sequences or peptides. Interface to NCBI BLAST v2.2.27 for searching against the R108 assembly. Interface to NCBI BLAST v2.2.27 for searching against the CADL assembly.
R108 Downloads
http://mtweb1.cfans.umn.edu/downloads/r108
M truncatula de novo. Detailed description of the data file is available from the readme. File (updated 20 May 2015). We are providing this data pre-publication to facilitate other community research. However, in accordance with the Toronto Agreement, we reserve the right to be the first to publish a genome-wide analysis of the data we have generated. Further, the pre-publication data released here is embargoed for publication except for analyses of individual gene loci or small genomic regions (.
CADL Downloads
http://mtweb1.cfans.umn.edu/downloads/cadl
M truncatula de novo. Detailed description of the data file is available from the readme. File (updated 7 June 2016). More tools are available at the Alfalfa Genomics Network. CADL HM342.v0.95P.fasta.gz. CADL v0.95p README.pdf. Site hosted by: Nevin Young's Lab at University of Minnesota. Managed By: Joseph Guhlin. Primary Collaborators: INRA - Montpellier. Co-Principal Investigators: University of Minnesota. N Young, P. Tiffin, M. Sadowsky, B. Stupar, K. Silverstein NCGR. J Mudge, A. Farmer.
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Medicago truncatula Hapmap Project
M truncatula de novo. We are building a hapmap based on short-read sequencing of approximately 330 inbred Medicago truncatula. Accessions. This provides a foundation for discovering single nucleotide polymorphisms (SNPs), insertions/ deletions (INDELs) and copy number variants (CNV's) at very high resolution among the Medicago. We are developing a Medicago. Hapmap as part of an international consortium consisting of the University of Minnesota. The National Center for Genome Resources. Lines Thirty of th...
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