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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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bbmri | mvid-central.com Reviews

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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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bbmri | mvid-central.com Reviews

https://mvid-central.com

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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Preferences: General – bbmri

http://www.mvid-central.com/prefs

This page lets you customize your personal settings for this site. These settings are stored on the server and are identified by a session key stored in a browser cookie. That cookie allows your settings to be restored on subsequent visits. This information is used to automatically populate some forms on this site with your contact details. Powered by Trac 1.0.7. Visit the Trac open source project at. Http:/ trac.edgewall.org/.

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DeNovoVariationPipeline – bbmri

http://www.mvid-central.com/wiki/DeNovoVariationPipeline

This pipeline aims to discover and verify the 'de-novo' mutations. Yurii, Kai, Morris. Availability of FASTQ (hard) and VCF (soft) data, ChipBasedQcPipeline. Other projects depending on this. No, this is an end-project. Establish custom 'de-novo' discovery pipeline. Identify and verify a number of 'de-novo' mutations. Because GvNL will do sequencing at 12x, identification of 'de-novo' variants based on simplistic Mendelian checks (see MendelianQcPipeline. Last modified on Sep 26, 2010 9:54:37 PM.

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bbmri

http://www.mvid-central.com/wiki

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

4

GwasQcPipeline – bbmri

http://www.mvid-central.com/wiki/GwasQcPipeline

Removed all bad samples (taken from Mathieu). P-link - bfile GvNL 250111 - remove GvNL bad samples.txt - make-bed - out GvNL good samples. P-link - bfile GvNL samples - update-ids GvNL family update.txt - make-bed - out GvNL good fam. P-link - bfile GvNL good fam - update-parents GvNL parents update.txt - make-bed - out GvNL good fam par. Manual check for suspicious individuals (not in trios) and remove them. Check and update sex information. P-link - bfile GvNL good fam par susp - check-sex - make-bed.

5

ChipBasedQcPipeline – bbmri

http://www.mvid-central.com/wiki/ChipBasedQcPipeline

Protocol for comparison between sequencing (VCF) and chip data. In this project, we will establish an infrastructure and will cross-check the genotypic data generated by BGI with the data already available GWA scans (DNA chips). Yurii, Lennart, Elisa. End Sep 2010 - end Dec 2010. BI/data manager/programmer at 0.75 fte (the same as the one on MendelianQcPipeline. Experienced supervisor at 0.1 fte (the same as the one on MendelianQcPipeline. Availability of VCF data. Other projects depending on this. What ...

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bbmri

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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