ncrna.org

Bioinformatics Tools and Databases for Functional RNA Analysis – ncRNA.org is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by "The Functional RNA Pr

Bioinformatics Tools and Databases for Functional RNA Analysis. NcRNAorg is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by “The Functional RNA Project” funded by New Energy and Industrial Technology Development Organization (NEDO). Results of various analysis on RNA secondary structures in one page! Accurate prediction of RNA secondary structure. Functional RNA Database (archived at NBDC).

http://www.ncrna.org/

OVERVIEW OF ncrna.org

TRAFFIC RANK

>1,000,000

REVIEWS

0

PAGES IN THIS WEBSITE

9

LINKS TO THIS WEBSITE

CONTACTS

ADDRESSES

SOCIAL LINKS

ONLINE SINCE

WEBSITE DETAILS

SEO

PAGES

SIMILAR SITES

TRAFFIC RANK FOR NCRNA.ORG

TODAY'S RATING

>1,000,000

TRAFFIC RANK - AVERAGE PER MONTH

BEST MONTH

December

AVERAGE PER DAY Of THE WEEK

HIGHEST TRAFFIC ON

Saturday

TRAFFIC BY CITY

Sign up

CUSTOMER REVIEWS

Average Rating: 4.2 out of 5 with 13 reviews

5 star

9

4 star

0

3 star

3

2 star

0

1 star

1

Hey there! Start your review of ncrna.org

AVERAGE USER RATING

Write a Review

WEBSITE PREVIEW

LOAD TIME

2.2 seconds

CONTACTS AT NCRNA.ORG

DigiRock, Inc.

DIGIROCK INC.

Chuo-ku ●●●●●●●●ho 4-7-5

Osa●●●shi , OSAKA-FU, 541-0059

JP

81.6●●●●6585

in●●@value-domain.com

View this contact

DigiRock, Inc.

DIGIROCK INC.

Chuo-ku ●●●●●●●●ho 4-7-5

Osa●●●shi , OSAKA-FU, 541-0059

JP

81.6●●●●6585

in●●@value-domain.com

View this contact

DigiRock, Inc.

DIGIROCK INC.

Chuo-ku ●●●●●●●●ho 4-7-5

Osa●●●shi , OSAKA-FU, 541-0059

JP

81.6●●●●6585

in●●@value-domain.com

View this contact

ADD CONTACT

Login

TO VIEW CONTACTS

Remove Contacts

FOR PRIVACY ISSUES

DOMAIN REGISTRATION INFORMATION

REGISTERED: n/a
UPDATED: 2010 November 10
EXPIRATION: EXPIRED REGISTER THIS DOMAIN

BUY YOUR DOMAIN

NAME SERVERS

1: ns.cbrc.jp
2: ns2.cbrc.jp

REGISTRAR

eNom, Inc. (R39-LROR)

WHOIS : whois.publicinterestregistry.net

REFERRED :

CONTENT

PAGES IN
THIS WEBSITE

9

SSL

EXTERNAL LINKS

25

SITE IP

153.126.155.15

LOAD TIME

2.172 sec

SCORE

6.2

PAGE TITLE

Bioinformatics Tools and Databases for Functional RNA Analysis – ncRNA.org is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by "The Functional RNA Pr | ncrna.org Reviews

<META> DESCRIPTION

Bioinformatics Tools and Databases for Functional RNA Analysis. NcRNAorg is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by “The Functional RNA Project” funded by New Energy and Industrial Technology Development Organization (NEDO). Results of various analysis on RNA secondary structures in one page! Accurate prediction of RNA secondary structure. Functional RNA Database (archived at NBDC).

<META> KEYWORDS

1 softwares

2 mxscarna

3 murlet

4 rnamine

5 scarna

6 phmmts

7 pstag

8 rfold

9 stem kernels

10 web tools available

CONTENT

Page content here

KEYWORDS ON PAGE

softwares,mxscarna,murlet,rnamine,scarna,phmmts,pstag,rfold,stem kernels,web tools available,rtools,frnadb

SERVER

nginx/1.10.2

CONTENT-TYPE

utf-8

GOOGLE PREVIEW

Bioinformatics Tools and Databases for Functional RNA Analysis – ncRNA.org is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by "The Functional RNA Pr | ncrna.org Reviews

https://ncrna.org

Bioinformatics Tools and Databases for Functional RNA Analysis. NcRNAorg is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by “The Functional RNA Project” funded by New Energy and Industrial Technology Development Organization (NEDO). Results of various analysis on RNA secondary structures in one page! Accurate prediction of RNA secondary structure. Functional RNA Database (archived at NBDC).

INTERNAL PAGES

ncrna.org

1

PHMMTS – Bioinformatics Tools and Databases for Functional RNA Analysis

https://www.ncrna.org/softwares/phmmts

Pair Hidden Markov Models on Tree Structures. PHMMTS (Pair Hidden Markov Models on Tree Structures) aligns a sequence of unknown secondary structure to a sequence of known secondary structure. Sakakibara, Y: Pair hidden Markov models on tree structures. Bioinformatics, 2003, 19 Supl 1, i232-240 [pubmed]. Sato, K. and Sakakibara, Y.: RNA secondary structural alignment with conditional random fields. Bioinformatics, 2005, 21 Suppl 2, ii237-ii242 [pubmed].

2

Softwares – Bioinformatics Tools and Databases for Functional RNA Analysis

https://www.ncrna.org/softwares

MXSCARNA (Multiplex Stem Candidate Aligner for RNAs) is a multiple alignment tool for RNA sequences using progressive alignment based on pairwise structural alignment algorithm of SCARNA. This software is fast enough for large scale analyses, while the accuracies of the alignments are better than or comparable with the existing algorithms which are computationally much more expensive in time and memory. PSTAG (Pair Stochastic Tree Adjoining Grammars) for RNA sequences including pseudoknotted structures.

3

SCARNA – Bioinformatics Tools and Databases for Functional RNA Analysis

https://www.ncrna.org/softwares/scarna

SCARNA is an alignment tool for a pair of RNA sequences based on the predicted common secondary structure. We show the performance of SCARNA for the alignment of RNA sequences by computational experiments on the benchmark dataset of tRNAs used by Gardner et al. Comparison of accuracies with those of other aligners. The comparison of execution time of SCARNA with other methods in the following figure shows its applicability to real sequences.

4

PSTAG – Bioinformatics Tools and Databases for Functional RNA Analysis

https://www.ncrna.org/softwares/pstag

Pair Stochastic Tree Adjoining Grammars. PSTAG (Pair Stochastic Tree Adjoining Grammars) for RNA sequences including pseudoknotted structures. Matsui, H., Sato, K. and Sakakibara, Y.: Pair stcochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures. Bioinformatics, 2005, 21, 2611-2617 [pubmed]. Http:/ pstag.dna.bio.keio.ac.jp/. NcRNA org is provided by Computational Biology Research Consortium.

5

RNAmine – Bioinformatics Tools and Databases for Functional RNA Analysis

https://www.ncrna.org/softwares/rnamine

RNAmine is a software tool to extract the structural motifs from a set of RNA sequences using a graph mining technique. Developed by Mizuho Information and Research Institute. Secondary structures for a sequence. In this experiment, RNAmine is compared with CMfinder RNAfold RNAsubopt RNAalifold and comRNA CMfinder and comRNA exploit the common secondary structure, while RNAfold and RNAsubopt predicts the structure individually. Like RNAmine, RNAsubopt derives a number of multiple possible structures ...

UPGRADE TO PREMIUM TO VIEW 4 MORE

TOTAL PAGES IN THIS WEBSITE

9

LINKS TO THIS WEBSITE

imsbio.co.jp

リンク集 | サイトマップ | 株式会社情報数理バイオ

http://www.imsbio.co.jp/sitemap-page/links

受付時間 9 30 18 00 土日祝日除く. Products & services. QEX Suite : 薬らしさ評価. BioPAX Working Group パスウェイの国際標準化フォーマットの策定を行っている。 BioPAXフォーマットの入出力ができるJavaライブラリのPaxtools(http:/ www.biopax.org/paxtools.php)なども開発している。 Agilent, The University of California, University of Toronto などあらゆる複雑ネットワークを可視化、解析するためのプラットフォーム。 The US National Institutes of Health, ENFIN, EBI ヒトのマニュアルキュレーションパスウェイデータベース一部、コンピュータによる推論されたパスウェイがある。 NEDO 機能性RNAプロジェクトのグループが作成運用している、機能性RNAと非コードRNAのポータルサイト. OLS Ontology Lookup Service. MDK社 Web ブラウザ、Java A...

cbrc.jp

Databases | CBRC

http://www.cbrc.jp/cbrc-databases

細胞システムの解析 Cellular System Analysis. タンパク質の構造機能予測 Protein Structure/Function Prediction. A database of elementary patterns of alternative splicing and transcription. Http:/ alterna.cbrc.jp/. FfRNA DB is composed of fRNAdb and USCS GenomeBrowser for Functional RNA. Http:/ www.ncrna.org/. A database of conformation changes in protein structures. Http:/ mbs.cbrc.jp/ConfC/. A database for structure-based protein interaction research. Http:/ mbs.cbrc.jp/DB-SPIRE/. A database of enzyme catalytic Mechanisms.

UPGRADE TO PREMIUM TO VIEW 23 MORE

TOTAL LINKS TO THIS WEBSITE

25

OTHER SITES

ncrn.org.uk

cPanel®

Apache is working on your cPanel. And WHM™ Server. If you can see this page, then the people who manage this server have installed cPanel and WebHost Manager (WHM). Which use the Apache Web server. Software and the Apache Interface to OpenSSL (mod ssl). Successfully. They now have to add content to this directory and replace this placeholder page, or else point the server at their real content. Try sending an email to. About Apache HTTP Server:.

ncrna-pain.eu

Non-coding RNAs for personalised pain medicine · ncRNAPain

Non-coding RNAs for personalised pain medicine. NcRNAPain: on the trail of chronic pain. This project has received funding from the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement No 602133.

ncrna.com

domo.phpwebhosting.com - fast, cheap webhosting web host with php, mysql, php3

Server: domo.phpwebhosting.com. To get to our main site. Users on this server may login to the control panel here:. Try using just the first 12 characters of your system password. All services offered through phpwebhosting.com, LLC.

ncrna.jp

ホーム - ノンコーディングRNAネオタクソノミ

Tropomyosin isoforms differentially affect muscle contractility in the head and body regions in the nematode Caenorhabditis elegans. Paraspeckles: Where Long Noncoding RNA Meets Phase Separation. Live imaging of X chromosome inactivation and reactivation dynamics. Real-space and real-time dynamics of CRISPR-Cas9 visualized by high-speed atomic force microscopy. Defects in dosage compensation impact global gene regulation in the mouse trophoblast. EMBO meeting @ Weismann Institute (3).

ncrna.net

沉默是金 | Bioinformatics

Gffread除了可以提取FA序列，还有一个附属功能是GFF与GTF间的转换 gffread In.gff3 -T -o Out.gtf gffread In.gtf -o Out.gff3 Try! How to Calculate Upper Quartile. 8260; 共 91字 ⁄ 暂无评论. 8260; 阅读 112 views 次. Gffread除了可以提取FA序列，还有一个附属功能是GFF与GTF间的转换 gffread In.gff3 -T -o Out.gtf gffread In.gtf -o Out.gff3 Try! 8260; 阅读 347 views 次. The percent of cases that are at or below a score. But only count half of the cases that are at the score. Example: i. RNA methylation recently found to b. Agilent Microarray Annotation and E. 8260; 评论数 1.

ncrna.org

Bioinformatics Tools and Databases for Functional RNA Analysis – ncRNA.org is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by "The Functional RNA Pr

Bioinformatics Tools and Databases for Functional RNA Analysis. NcRNAorg is the portal site for bioinformatics tools and databases spcialized for functional RNAs. The developments in this cite were partially supported by “The Functional RNA Project” funded by New Energy and Industrial Technology Development Organization (NEDO). Results of various analysis on RNA secondary structures in one page! Accurate prediction of RNA secondary structure. Functional RNA Database (archived at NBDC).

ncrnablog.blogspot.com

ncRNA+Blog

October 3, 2014. NcRNAblog は、新学術非コードRNAの終了に伴い、今後は下記のブログに引き継がれます。その名も、新学術ncRNAネオタクソノミ公式ブログ. 12304;私の最初の研究テーマ】の連載を皮切りに、この業界の最新動向、過去の動向、秘密の情報、どんどん発信していきます。皆さん長らくご愛読（？）ありがとうございました。 August 30, 2014. 複合体が可溶化出来れば精製なんてオチャノコサイサイと思っていたのが大間違いで、結果として、単に我々の腕が悪かっただけなのでしょうが、MS2、PP7などのタグをつけて複合体を引っ張ってくるというアプローチはうまくいきませんでした。うまくいかないというのは要するに、関係のないRNAで引っ張ってきたコントロールとほとんど銀染のパターンが変わらない、ということです。ということで、SDGの分画をPLLコートしたスライドグラスにのせて、そのままin situ hybridization! ともあれ、アシベ探しは振り出しに戻ってしまったわけですが、（１）でちょっと触れた通り&#...12288;というわけで、Celf3...

ncrnabodymap.org

The miRNA body-map

9,829,564 datapoints. Dissecting miRNA function through integrative genomics. The microRNA body map is a repository of RT-qPCR miRNA expression data and functional miRNA annotation in normal and diseased human tissues. The accompanying expression analysis pipeline. Tool, predicted miRNA functions for your miRNA of choice can be retrieved. The function2miRNA. Additional figures and examples of data analysis are listed under the tutorial section. Additional datasets can be uploaded. P Mestdagh et al., ...

ncrnadatabases.org

Non-coding RNA Databases Resource - NRDR

ncrnas.com

福际非编码RNA研究中心

福际非编码RNA研究中心以“引领中国lncRNA研究及产业化发展”为目标，致力于提供专业化服务，与合作伙伴一起，共同推动中国ln. 更多. Long noncoding RNAs regulate adipogenesis. A long noncoding RNA conn. Long noncoding RNA derived.