ndb-mirror-3.rutgers.edu

Nucleic Acid Database (NDB)

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.

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Nucleic Acid Database (NDB) | ndb-mirror-3.rutgers.edu Reviews

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A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.

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4 education

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8 search rna

9 advanced search

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Nucleic Acid Database (NDB) | ndb-mirror-3.rutgers.edu Reviews

https://ndb-mirror-3.rutgers.edu

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.

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ndb-mirror-3.rutgers.edu

1

NDB Education

http://ndb-mirror-3.rutgers.edu/ndbmodule/education/education.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. Introduction to Nucleic Acids. NA Highlights from PDB-101. Paper Model of DNA. Paper Model of tRNA. A-DNA w. mismatches. B-DNA w. mismatches. An Introduction to Nucleic Acids: DNA. Throughtout the site, in all DNA nucleotide block models, adenine is red, thymine is blue, cytosine is yellow, guanine is green. An Introduction to Nucleic Acids: RNA.

2

Nucleic Acid Standards - Standard Ref. Frame

http://ndb-mirror-3.rutgers.edu/ndbmodule/standards/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A Standard Reference Frame for the Description. Of Nucleic Acid Base-pair Geometry. Journal of Molecular Biology. For full text please refer the PDF Version. 1995-2015 The Nucleic Acid Database Project Rutgers, The State University of New Jersey.

3

Nucleic Acid Tools

http://ndb-mirror-3.rutgers.edu/ndbmodule/services/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A collection of representative base pairs and heatmaps for each base pair family. RNA 3D Motif Atlas. A representative collection of RNA 3D internal and hairpin loop motifs. Petrov, A.I., Zirbel, C.L., Leontis, N.B. (2013) Automated classification of RNA 3D motifs and the RNA 3D motif atlas. RNA. Of RNA-containing 3D structures. A webserver for ...

4

Nucleic Acid Softwars

http://ndb-mirror-3.rutgers.edu/ndbmodule/services/softwares.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A software for finding local and composite recurrent structural motifs in RNA 3D structures. Sarver, M., Zirbel, C.L., Stombaugh, J., Mokdad, A. and Leontis, N.B. (2008) FR3D: finding local and composite recurrent structural motifs in RNA 3D structures. J Math Biol, 56, 215-252. A program to display and/or edit RNAView 2-dimensional diagrams.

5

NDB General Information

http://ndb-mirror-3.rutgers.edu/ndbmodule/about_ndb/about.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. Helen M. Berman, Ph.D. Rutgers University. Wilma K. Olson, Ph.D. Rutgers University. David Beveridge, Ph.D. Wesleyan University. Neocles B. Leontis, Ph.D. Bowling Green state University. Craig L. Zirbel, Ph.D. Bowling Green state University. Anton I. Petrov, Ph.D. Bowling Green state University. Blake Sweeney, Bowling Green state University.

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Nucleic Acid Database (NDB)

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.

ndb-mirror-3.rutgers.edu

Nucleic Acid Database (NDB)

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.

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