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Nucleic Acid Database (NDB)

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.

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Nucleic Acid Database (NDB) | ndbserver.rutgers.edu Reviews
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A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.
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1 download
2 software
3 tools
4 education
5 standards
6 about ndb
7 search dna
8 search rna
9 advanced search
10 search structures
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Nucleic Acid Database (NDB) | ndbserver.rutgers.edu Reviews

https://ndbserver.rutgers.edu

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.

INTERNAL PAGES

ndbserver.rutgers.edu ndbserver.rutgers.edu
1

NDB Download

http://ndbserver.rutgers.edu/ndbmodule/download_data/downloadIndex.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. Download Data from FTP Server. Dowload NDB ID to PDB ID mapping (tsv format). Coordinate files (PDB format) for one biological assembly of nucleic acid-containing structures determined by x-ray crystallography. Copies of the coordinate files released by the PDB for nucleic acid-containing structures determined by NMR.

2

Nucleic Acid Softwars

http://ndbserver.rutgers.edu/ndbmodule/services/softwares.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A software for finding local and composite recurrent structural motifs in RNA 3D structures. Sarver, M., Zirbel, C.L., Stombaugh, J., Mokdad, A. and Leontis, N.B. (2008) FR3D: finding local and composite recurrent structural motifs in RNA 3D structures. J Math Biol, 56, 215-252. A program to display and/or edit RNAView 2-dimensional diagrams.

3

Nucleic Acid Standards - Standard Ref. Frame

http://ndbserver.rutgers.edu/ndbmodule/standards/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A Standard Reference Frame for the Description. Of Nucleic Acid Base-pair Geometry. Journal of Molecular Biology. For full text please refer the PDF Version. 1995-2015 The Nucleic Acid Database Project Rutgers, The State University of New Jersey.

4

NDB General Information

http://ndbserver.rutgers.edu/ndbmodule/about_ndb/about.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. Helen M. Berman, Ph.D. Rutgers University. Wilma K. Olson, Ph.D. Rutgers University. David Beveridge, Ph.D. Wesleyan University. Neocles B. Leontis, Ph.D. Bowling Green state University. Craig L. Zirbel, Ph.D. Bowling Green state University. Anton I. Petrov, Ph.D. Bowling Green state University. Blake Sweeney, Bowling Green state University.

5

Nucleic Acid Tools

http://ndbserver.rutgers.edu/ndbmodule/services/index.html

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 17-Aug-2016 number of released structures: 8433. Search for released structures. A collection of representative base pairs and heatmaps for each base pair family. RNA 3D Motif Atlas. A representative collection of RNA 3D internal and hairpin loop motifs. Petrov, A.I., Zirbel, C.L., Leontis, N.B. (2013) Automated classification of RNA 3D motifs and the RNA 3D motif atlas. RNA. Of RNA-containing 3D structures. A webserver for ...

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kuwari.tau.ac.il kuwari.tau.ac.il

NMR links

http://kuwari.tau.ac.il//NMRlinks.html

Solid state NMR group - Amir Goldbourt. Tel Aviv University, School of Chemistry. NMR in Spectroscopy now. Compilation of the early papers on NMR. Structure determination by NMR. Drorlist-groups, structures and more. Classification of viruses: ICTV. Biological magnetic resonance data bank:. Tel Aviv: Yoram Cohen. Reviews - Biosolids NMR. Molecular interactions investigated by multi-dimensional solid-state NMR. Magic-angle spinning solid state NMR: application to structural biology.

rcsb.org rcsb.org

RCSB PDB - MyPDB: Login

http://www.rcsb.org/pdb/admin/reconcile.do

WwPDB Deposition and Annotation System. Deposition Help and Resources. BioSync Beamlines / Facilities. Unreleased and New Entries. Drugs and Drug Targets. Sequence and Structure Alignment. Map Genomic Position to Protein. FTP Archive and Services. Molecule of the Month. Guide to PDB Data. Register a New Account. An Information Portal to 122121. Forget your Username or Password? Don't have a MyPDB account? Click here to Sign Up. RCSB PDB ( citation. Is managed by two members of the.

karsisiotis.blogspot.com karsisiotis.blogspot.com

Just another little blog: June 2008

http://karsisiotis.blogspot.com/2008_06_01_archive.html

Monday, June 23, 2008. Blog traffic: June 2007- June 2008. Posted by Yannis Karsisiotis. Friday, June 6, 2008. Bristol Time: The return of a trip-hop legacy (The Independent - Friday, 11 April 2008). Bristol Time: The return of a trip-hop legacy. The capital of trip-hop is back on track with a slew of new recordings from its Nineties pioneers. By Nick Hasted. Portishead are the first of the scene's major players to return, with the appropriately named album Third. And they are the classic example of ...

karsisiotis.blogspot.com karsisiotis.blogspot.com

Just another little blog: July 2008

http://karsisiotis.blogspot.com/2008_07_01_archive.html

Monday, July 28, 2008. Piri Reis and the Hapgood Hypotheses: From the archives of the Ottoman Empire an intriguing and irresistible mystery. Piri Reis and the Hapgood Hypotheses. From the archives of the Ottoman Empire an intriguing—and irresistible—mystery. Written by Paul F. Hoye and Paul Lunde. Or did he die thinking he had found a new route to China? As it turned out, the map did not settle the question. To the contrary, it has raised new and far more perplexing questions, and, in recent years, h...

karsisiotis.blogspot.com karsisiotis.blogspot.com

Just another little blog: April 2008

http://karsisiotis.blogspot.com/2008_04_01_archive.html

Saturday, April 19, 2008. Fere mas to kypello, OOOO. ARH mou se agapw, oooo, ARH mou 8a trela8w, ARH den eimai kala, ARH den bazw myalo, oooo, fere mas to kypello, oooo . Posted by Yannis Karsisiotis. Saturday, April 5, 2008. The long long wait has come to an end. The 3rd (also album title! Different, but it grows on you. I will post a decent review soon but for now I already fell in love with the track "Magic Doors'. Posted by Yannis Karsisiotis. Subscribe to: Posts (Atom). Just another little blog.

karsisiotis.blogspot.com karsisiotis.blogspot.com

Just another little blog: June 2010

http://karsisiotis.blogspot.com/2010_06_01_archive.html

Thursday, June 10, 2010. Now I know what I can strive for! Posted by Yannis Karsisiotis. Subscribe to: Posts (Atom). Just another little blog. A few things about myself and what I want to share with the rest of the world. Biological Magnetic Resonance Data Bank (Wisconsin Madison). Blast (NCBI sequece homology search). CCPN (The Collaborative Computing Project for NMR). ClustalW2 at EMBL (general purpose multiple sequence alignment program for DNA or proteins). Pfam database (a large collection of protei...

karsisiotis.blogspot.com karsisiotis.blogspot.com

Just another little blog: Third Person Lurkin - The Nameless City (from Dusted Wax Kingdom net label)

http://karsisiotis.blogspot.com/2010/09/third-person-lurkin-nameless-city-from.html

Friday, September 24, 2010. Third Person Lurkin - The Nameless City (from Dusted Wax Kingdom net label). Who said that free stuff are not excellent? Check out this album of unexpected quality from the Bulgarian net label Dusted Wax Kingdom. (Very "Mo Wax"-ish name, I know). English producer Tommy Marshall (a.k.a. Marshall Artist) ventured into trip hop and the result is very cool mixture of downtempo beats, familiar samples and a great genre aesthetic. I am sure it will win you too. Third Person Lurkin -...

taxane.chem.unb.ca taxane.chem.unb.ca

Visualization links

http://taxane.chem.unb.ca/GD/mm/index.html

Check out the games section. Here's a collection of multimedia chemistry resources on the Web. Some items are dated, so please notify me if you find dead links or find new items. The colored symbols at the end of each link indicate the document type (for details, go to the glossary. To submit an entry or report a dead link, drop me a line at ghislain@unb.ca. Search/view structures in the Protein Databank. ( WWW. KEGG: Kyoto Encyclopedia of Genes and Genomes. E coli Genome Center. E coli Genome Report.

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ndbserver.rutgers.edu ndbserver.rutgers.edu

Nucleic Acid Database (NDB)

A Portal for Three-dimensional Structural Information about Nucleic Acids. As of 10-Apr-2018 number of released structures: 9435. Search for released structures. Welcome to the NDB. The NDB contains information about experimentally-determined nucleic acids and complex assemblies. Use the NDB to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and learn about nucleic acids. Search DNA and its complexes. RNA 3D Motif Atlas. RNA Base Triple Atlas.

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Welcome to NDB

Call us 020 8459 2355. One offs / end of Build. Welcome to NDB Services. It is our thoroughness and work ethic that has brought our customers back to us time and time again, together with the knowledge that for us at NDB quality is not just about providing a standard that is consistent and the same, but one that consistently continues to grow, learn and improve. NDB Services / Design and Development by Vital Concept.

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Data Center & Cloud. Sponsors & Exhibitors. NORDIC DIGITAL BUSINESS SUMMIT #NDBS2015. On September 24, 2015. Tallberginkatu 1, 00180 Helsinki. Register For This Event. The Business of Technology –. Nordic Data Center investments continue to grow, fuelled by the exponential global increase of data being generated by the Internet of Things industry. But how exactly are these industries impacting each other? Where are the opportunities? What do we need to do to lead rather than follow? Data Centers and Cloud.

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NDB Sex Stories

Complete sex stories all over the world. 18. Wednesday, 12 August 2015. Sex With My New Step Brother PART 8 (25 ). Me: oh my God! You scared me, what. Are you doing here? Daniel: what does it look like? Me: Jesus Christ, youre even naked,. I cant watch this ( I tried to hide my. Daniel: (laughs and start talking in a. Very flirty tone) well this is not your. First time of seeing, Atleast youve. Seen it before and youve also felt it. Too, very well if Im correct,. Youve enjoyed the whole thing. Come and p...

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