neurocommons.org

NeuroCommons

Here you'll find technical information on the NeuroCommons project. For general and non-technical information on the project please consult:. Our work covers general data and knowledge sources used in computational biology as well as sources specific to neuroscience and neuromedicine. The practices that we develop and promote are designed to play well on the Semantic Web. Protocol for querying triple stores. Automated text to RDF. We provide an distribution. Of a variety of RDF. We have a triple store.

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Here you'll find technical information on the NeuroCommons project. For general and non-technical information on the project please consult:. Our work covers general data and knowledge sources used in computational biology as well as sources specific to neuroscience and neuromedicine. The practices that we develop and promote are designed to play well on the Semantic Web. Protocol for querying triple stores. Automated text to RDF. We provide an distribution. Of a variety of RDF. We have a triple store.

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NeuroCommons | neurocommons.org Reviews

https://neurocommons.org

Here you'll find technical information on the NeuroCommons project. For general and non-technical information on the project please consult:. Our work covers general data and knowledge sources used in computational biology as well as sources specific to neuroscience and neuromedicine. The practices that we develop and promote are designed to play well on the Semantic Web. Protocol for querying triple stores. Automated text to RDF. We provide an distribution. Of a variety of RDF. We have a triple store.

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sw.neurocommons.org

Neurocommons

This page is obsolete. Please visit the Neurocommons project site. In 2007 Science Commons intends to roll out artifacts and demonstrations that show the construction of a semantic web for science - in particular, for neuroscience. Our efforts toward such a "Neurocommons" are in three areas:. More about the data integration pilot. More about the text mining pilot. The application of prior knowledge to experimental data can lead to fresh insights. For example, a set of genes or proteins derived from h...

wiki.neurocommons.org

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waxholm.neurocommons.org

INCF Forum • Index page

Last visit was: Sat Aug 15, 2015 5:32 am. It is currently Sat Aug 15, 2015 5:32 am. Interoperable Atlases of the Human Brain White Paper Discussion. Mon Apr 07, 2014 9:31 pm. In total there is 1. User online : 1 registered, 0 hidden and 0 guests (based on users active over the past 5 minutes). Most users ever online was 5. On Wed Jun 04, 2014 7:39 am. Registered users: Google [Bot]. Bull; Total topics 18. Bull; Total members 36. Bull; Our newest member tiesinga. All times are UTC.

INTERNAL PAGES

neurocommons.org

1

URI documentation protocol - NeuroCommons

http://neurocommons.org/page/URI_documentation_protocol

How should one go about finding documentation. That will explain what a URI is meant to name (or "denote"), in cases where this is needed and it is not already at hand? HTTP was designed to get you a web page, not to get information about naming, so the following protocol is not as elegant. As would be a protocol designed with naming in mind. If you're doing bulk processing of URI documentation, you may be better off doing bulk downloads or SPARQL. Such as those in the RDF Schema vocabulary. Rule that ap...

2

Triple store - NeuroCommons

http://neurocommons.org/page/Triple_store

This article has been marked as incomplete. Please help us by. The Neurocommons triple store hosts the contents of our RDF distribution. It may be accessed via SPARQL. Query at our SPARQL form. Keeping up with the OBOs. Retrieved from " http:/ neurocommons.org/page/Triple store. This page has been accessed 8,769 times. It was last modified at 01:18 on 30 September 2008. Except where otherwise noted. Content on this site is licensed under a Creative Commons Attribution 3.0 License.

3

URI requirements - NeuroCommons

http://neurocommons.org/page/URI_requirements

Here is our current understanding of what is required of a URI that is to be use in a Semantic Web for scholarship. These should be observed by everyone writing RDF - both users of existing URIs (who are considering what's already available) and those coining new URIs. The intended referent of the URI must be made clear through documentation. Provision of such documentation via a widely deployed network protocol (see URI documentation protocol. Must be an ongoing concern. Documentation must be open.

4

URIs - NeuroCommons

http://neurocommons.org/page/URIs

Table of contents - URI-related pages. A URI needs to be stable and trustworthy. A URI needs to have a well documented meaning. How to find out what a URI means. Why a URI can outlive its web location. Sometimes data and metadata must part ways. How to get others to use your URIs. A URI is simply a string having a certain form (defined in RFC 3986. Usually recognizable by beginning with a short acronym followed by a :, as in http:/ neurocommons.org/page/URIs. How do you find out what a URI names? Fail on...

5

Analytic tools - NeuroCommons

http://neurocommons.org/page/Analytic_tools

A variety of statistical techniques for analyzing high-throughput biological data sets have been developed that figure prior knowledge about the entities being measured into their analysis. Such techniques are most effective when provided with high-quality "curated" knowledge - knowledge that is, or can be, represented in RDF. Of particular interest are functional knowledge of genes and proteins, and understanding of their interactions, in the analysis of DNA microarray data sets. Joël Pradines et al.

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sciencecommons.org

Science Commons » Alan Ruttenberg

http://sciencecommons.org/about/whoweare/ruttenberg

Science Commons was re-integrated. With Creative Commons. This content is no longer maintained and remains only for reference. Databases and Creative Commons. Science Commons was re-integrated with Creative Commons. Prior to joining Science Commons, I worked at Millennium Pharmaceuticals. Public databases such as KEGG’s LIGAND. As well some information our group has curated from the literature. A. Powerpoint touching on the sorts of things we worked on is available here. My interest lies in structuring a...

cszamudio.wordpress.com

February | 2009 | Carlos S. Zamudio of Semantic Laboratories

https://cszamudio.wordpress.com/2009/02

Carlos S. Zamudio of Semantic Laboratories. Semantic Mashup for Nicotine Dependence Research. February 13, 2009. Here’s an excellent paper. By S Sahoo, O Bodenreider, JL Butter, KJ Skinner, and AP Sheth titled An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence . From the abstract:. This is a good paper illustrating the advantages of using semantic technologies for data integration. February 12, 2009. From the RDB2RDF incubator g...

cszamudio.wordpress.com

LabAutomation 2009 Presentations | Carlos S. Zamudio of Semantic Laboratories

https://cszamudio.wordpress.com/2009/02/02/labautomation-2009-presentations

Carlos S. Zamudio of Semantic Laboratories. Java Content Repositories →. February 2, 2009. I recently participated in a couple of sessions at the LabAutomation 2009. Conference in Palm Springs, CA. LabAutomation is an annual meeting of the laboratory automation industry focused on the Life Sciences. I participated in two sessions: Data Management, Mining and Visualization chaired by Petar Stojadinovic and Ontologies and Semantic Technologies in Drug Discovery chaired by Dr. Reinhold Shafer. Fill in your ...

obi-ontology.org

Pages that link to "Main Page" - OBI Ontology

http://obi-ontology.org/page/Special:WhatLinksHere/Main_Page

Pages that link to "Main Page". The following pages link to Main Page. View (previous 50 next 50) ( 20. Redirect page) ( links. Conference call developers agenda. Workshop Bethesda 2007 July case review. View (previous 50 next 50) ( 20. Retrieved from " http:/ obi-ontology.org/page/Special:WhatLinksHere/Main Page.

obi-ontology.org

Categories - OBI Ontology

http://obi-ontology.org/page/Special:Categories

The following categories contain pages or media. Unused categories. Are not shown here. Also see wanted categories. Display categories starting at:. Retrieved from " http:/ obi-ontology.org/page/Special:Categories.

obi-ontology.org

Core - OBI Ontology

http://obi-ontology.org/page/Core

OBI Core is a collection of key terms from OBI and related ontologies. It serves two related purposes:. For OBI users the core provides a starting point for understanding the most important high-level terms and their relations. For ontology developers the core provides the fundamental organization of OBI, and a structure into which more specific terms can be fitted. OBI Core consists of two parts:. The "inner core" of 29 terms that belong to OBI and IAO. See also: status of the term review process. Study...

obi-ontology.org

OBI Tutorials - OBI Ontology

http://obi-ontology.org/page/OBI_Tutorials

OBI Tutorial at ICBO 2012, Graz, Austria. OBI Tutorial at ICBO 2011, Buffalo, NY. OBI Tutorial at ICBO 2009, Buffalo, NY. All the slides and related documents are available under the OBI SVN: OBI tutorial July 2012 ICBO. Content: Overview of OBI including details of OBI core ( Reference 1. Hands-on Exercises: Accessing and browsing OBI and associated resources. Representation Of Biomedical Investigations Using OBI. This part will also cover the relationship between OBI and the Evidence Code Ontology (ECO).

obi-ontology.org

Technical Reports - OBI Ontology

http://obi-ontology.org/page/Technical_Reports

Technical reports consists of user guides and development specifications or methodologies used in the design, development and application of OBI. Work in progress documents. Minimum information to reference an external ontology term. Minimal requirement for term annotations in OBI. OBI Adding New Term Policy. Defined classes in OBI. Naming conventions for use within OBI. Go with tracker items. Quick term submission for an OBI ID. Viewing and editing OBI in Protege. Work in progress documents. Document pe...

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neurocommons.org

NeuroCommons

Here you'll find technical information on the NeuroCommons project. For general and non-technical information on the project please consult:. Our work covers general data and knowledge sources used in computational biology as well as sources specific to neuroscience and neuromedicine. The practices that we develop and promote are designed to play well on the Semantic Web. Protocol for querying triple stores. Automated text to RDF. We provide an distribution. Of a variety of RDF. We have a triple store.

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Cell Phone Lookup | Spam Reporting | NeuroCommSpeech Cellular Directory

NeuroCommSpeech is a one stop shop for spam reporting. We also have a cell phone directory at your disposal, where you can lookup information any number in our listing. Phone Numbers By Area Code. Below is a list of area codes in the United States / Canada. By selecting an areacode the system will return supported exchange where spam report activity exists. Virgin Islands (U.S.). Turks And Caicos Islands). Saint Vincent And The Grenadines). Saint Kitts And Nevis).

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