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Bioafrica Bioinformatics in Africa - HIV, TB and other pathogens affecting Human Health in Africa

Bioinformatics in Africa. HIV, TB, HPV, HBV and other pathogens bioinformatics and drug resistance research in Africa. Bioafrica is based at the Wellcome Trust Major Overseas Program Africa Centre for Health and Population Studies, UKZN, South Africa. HIV subtype C, HIV evolution, REGA subtyping tool, HIV proteomics, RNA Virus Database

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Bioafrica Bioinformatics in Africa - HIV, TB and other pathogens affecting Human Health in Africa | newbioafrica.mrc.ac.za Reviews
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Bioinformatics in Africa. HIV, TB, HPV, HBV and other pathogens bioinformatics and drug resistance research in Africa. Bioafrica is based at the Wellcome Trust Major Overseas Program Africa Centre for Health and Population Studies, UKZN, South Africa. HIV subtype C, HIV evolution, REGA subtyping tool, HIV proteomics, RNA Virus Database
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Bioafrica Bioinformatics in Africa - HIV, TB and other pathogens affecting Human Health in Africa | newbioafrica.mrc.ac.za Reviews

https://newbioafrica.mrc.ac.za

Bioinformatics in Africa. HIV, TB, HPV, HBV and other pathogens bioinformatics and drug resistance research in Africa. Bioafrica is based at the Wellcome Trust Major Overseas Program Africa Centre for Health and Population Studies, UKZN, South Africa. HIV subtype C, HIV evolution, REGA subtyping tool, HIV proteomics, RNA Virus Database

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newbioafrica.mrc.ac.za newbioafrica.mrc.ac.za
1

BioAfrica - Viruses Genotyping Tools

http://newbioafrica.mrc.ac.za/rega-genotype/html/index.html

Click in one of the virus on the tree to subtype your sequences. REGA HIV-1 Subtyping Tool. REGA HIV-2 Subtyping Tool. Dengue, Zika and Chikungunya Subtyping Tool. Oxford Hepatitis B virus Subtyping Tool. Oxford Hepatitis C virus Subtyping Tool. BioAfrica Human herpesvirus 8 Subtyping Tool. REGA Human papillomavirus Subtyping Tool. About the tools' publications and its developers. The Virus Genotyping Tools are developed in cooperation. UKZN, South Africa. With the Evolutionary Biology Group.

2

BioAfrica - BlastAlign. Program that uses blast to align nucleotide sequences with large indels.

http://newbioafrica.mrc.ac.za/blast/BlastAlign.html

BlastAlign Web Interface - Version 1.0. BlastAlign: a program that uses blast to align nucleotide sequences that have large indels (INsertions/DELetions) or are otherwise difficult to align. Paste here your sequences in FASTA. How do I cite BlastAlign? BlastAlign Developed by Robert Belshaw and Aris Katzourakis. Web-interface developed by Aris Katzourakis, Robert Belshaw and Tulio de Oliveira. By Tulio de Oliveira.

3

Bioafrica Case: Adult female with virological failure on first line d4T/3TC/EFV

http://newbioafrica.mrc.ac.za/cases.php?id=1

Open Access HIV and TB drug resistance clinical cases:. Here we provide you with cases published in the HIV/TB Drug Resistance and Clinical Management Case Book. These cases have been presented to over 1000 medical doctors in southern Africa at the annual SATuRN Drug Resistance Workshops. The objective is to capacitate doctors, nurses and allied medical staff at all levels of the health system to prevent and manage HIV and TB drug resistance. This patient last three viral loads have been above 5000 copie...

4

BioAfrica: HIV-1 subtype C in Africa Resources

http://newbioafrica.mrc.ac.za/subtype/subC/index.html

HIV-1 Subtype C in Africa Molecular Epidemiology Resources. This website resource has been compiled to organize and distribute information on the HIV/AIDS subtype C epidemic in Africa. The information was collected from different sources including HIV prevalence studies, reports on the HIV/AIDS epidemic and genetic analyses of HIV-1 subtype C molecular sequences. The source of the information is referred to on the page. Used in the Phylogenetic Analysis of subtype C sequences are also distributed.

5

RNA Virus database - Home Page

http://newbioafrica.mrc.ac.za/rnavirusdb/index.php

The database currently has 1062 viruses (June 2010). Mirrors available at Oxford. The RNA Virus Homepage. Identify your viral nucleotide or amino acid sequences. Get whole genome alignments for each virus species and align your sequence to them. To find information on all RNA viruses. Get amino acid sequences for viral genes and whole translated genomes for all viral species. Links to other virus web sites. For questions, suggestions or problems please contact: Robert Belshaw.

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Bioafrica Bioinformatics in Africa - HIV, TB and other pathogens affecting Human Health in Africa

BioAfrica presents the research, software and publications of Tulio de Oliveira. And members of their research groups. The bioafrica.net website and Tulio de Oliveira research team. Gender Differences in Survival among Adult Patients Starting Antiretroviral Therapy in South Africa: A Multicentre Cohort Study. Cornell M, Schomaker M, Garone DB, Giddy J, Hoffmann CJ, Lessells R, Maskew M, Prozesky H, Wood R, Johnson LF, Egger M, Boulle A, Myer L For IeDEA-SA, PLoS Medicine. 2012), ISBN 978 92 4 150393 8:.

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