nightingale.cme.msu.edu
RDP Release 11 -- Sequence Analysis ToolsRibosomal Database Project at Michigan State University
http://nightingale.cme.msu.edu/
Ribosomal Database Project at Michigan State University
http://nightingale.cme.msu.edu/
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RDP Release 11 -- Sequence Analysis Tools | nightingale.cme.msu.edu Reviews
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Ribosomal Database Project at Michigan State University
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Ribosomal Database Project Wiki
http://nightingale.cme.msu.edu/wiki/index.php/Main_Page
From Ribosomal Database Project Wiki. Welcome to the RDP Wiki. This wiki contains the information, help pages, and Frequently Asked Questions for all of the RDP tools and related sites. Common tasks in ecological analysis using NGS data. Retrieved from " http:/ rdp.cme.msu.edu/wiki/index.php? This page was last modified on 31 March 2015, at 10:32. This page has been accessed 118,230 times. Content is available under Creative Commons Attribution Non-Commercial Share Alike.
RDP Resources
http://nightingale.cme.msu.edu/misc/resources.jsp
RDP Resource Download Area. Please take a moment to review our License Agreement. Before downloading any data from our site. RDP Tools Repository - Run RDP Tools Locally. Install RDP tools to your local computer, available from GitHub https:/ github.com/rdpstaff. RDP Aligners, Classifier, Clustering, FrameBot, GFClassify, Initial Process, KmerFilter, ProbeMatch, ReadSeq, SequenceMatch, SOAP-examples, Xander-HMMgs). And http:/ sourceforge.net/projects/rdpframebot/. Is released in June 2016. Please see the...
RDP Release Notes
http://nightingale.cme.msu.edu/misc/rel10info.jsp
Ribosomal Database Project Release 11. Please note the RDP License Agreement and how to cite services from this site. RDP Release 11 Notes. Notes and Clarifications About RDP. Release 11 Update History. RDP Release 11 Notes. RDP Release 11 provides many significant enhancements over RDP release 10:. New Data Collection- Fungal 28S rRNA Sequences. New and Updated Alignment. This aligner has several advantages: it incorporates secondary-structure information into the alignment process; as a model-based ali...
RDP MIMARKS GoogleSheet
http://nightingale.cme.msu.edu/misc/googleSheetsHelp.jsp
RDP MIMARKS GoogleSheet - manage your metadata. RDP supports the Genomic Standards Consortium's M. Nformation about a MARK. Accepted 18 February 2011.]. More information can be found on the MIMARKS homepage. Where you can also find other projects promoting the MIMARKS standards like Terragenome (International Soil Metagenome Sequencing Consortium). RDP Support for Metadata Standards. RDP developed the MIMARKS GoogleSheet to help you manage the metatdata for your samples! Why a Google spreadsheet? Preconf...
Sequence Match
http://nightingale.cme.msu.edu/seqmatch/seqmatch_intro.jsp
You can select sequences from. And Hierarchy Browser to do seqmatch? Percent identity scores will be reported for aligned sequences (limited to 2000). Please enter your sequences:. Choose a file to upload. Cut and paste sequence(s) (in Fasta, GenBank, or EMBL format):. Note: Javascript must be enabled on your browser to use this RDP tool. Type strain information is provided by bacterial taxonomy. View only near-full-length sequences (. 1200 bases), short partials, or both.
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RDP Release 11 -- Sequence Analysis Tools
RDP web tool problems fixed! RDP web tool problems. We apologize for ongoing problems with several RDP web tools. Our team is now working hard to get them fixed! MyRDP login problem fixed! Apologize for the problem with myRDP login. Our team is working to fix it as soon as possible. Apology for slow/NO connection to RDP tools today. Thanks to Alex/Brian, etc. for working things out in the server room. RDP Director at GSC 19, May 14-17. Genomic Standards Consortium Meeting, Brisbane, Queensland, Australia.
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