nsr.bioeng.washington.edu

Welcome to the NSR Physiome Project!

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

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Welcome to the NSR Physiome Project! | nsr.bioeng.washington.edu Reviews

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This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

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2 models

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5 databasing of information

6 platform independent

7 networked search engines

8 recent publications

9 downloads

10 tutorials list

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Welcome to the NSR Physiome Project! | nsr.bioeng.washington.edu Reviews

https://nsr.bioeng.washington.edu

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

INTERNAL PAGES

nsr.bioeng.washington.edu

1

JSim Home Page

http://nsr.bioeng.washington.edu/jsim

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. Bibliography of JSim related work. JSim downloads are available as precompiled binaries. Linux, MacIntosh, Windows) or source code. JSim can also run as an applet. Within your web browser. JSim is provided free for non-commercial use as a public service by the National Simulation Resource. At the University of Washington. JSim 2.16 released (10 Dec 2015): release notes.

2

News and Anouncements

http://nsr.bioeng.washington.edu/News

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. United States IMAG (Interagency Modeling and Analysis Group) and MSM news. EBI (European Bioinformatics Institute) Biomodels news. National Biomedical Computation Resource (NBCR) news. SBML (Systems Biology Markup Language) news. This page was last modified 18Aug15, 11:26 am.]. Model development and archiving support at physiome.org provided by the following grants:.

3

News and Anouncements

http://nsr.bioeng.washington.edu/News/index.html

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. United States IMAG (Interagency Modeling and Analysis Group) and MSM news. EBI (European Bioinformatics Institute) Biomodels news. National Biomedical Computation Resource (NBCR) news. SBML (Systems Biology Markup Language) news. This page was last modified 18Aug15, 11:26 am.]. Model development and archiving support at physiome.org provided by the following grants:.

4

Organization

http://nsr.bioeng.washington.edu/About/organization.html

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Steering Group defines the overall direction and "umbrella" organizational structure for the Physiome Project. Serving as the "Board of Directors" for the Project as a whole, the Steering Group develops guidelines, defines standards, and works to enhance funding opportunities at the local and federal levels. Definition of Scientific Projects.

5

Websites:

http://nsr.bioeng.washington.edu/Links

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. Physiome Sites with Models Displayed or Available for Download. Simulation Software and Modeling Environments. National University, Singapore. Institute for Advanced Biosciences E-cell Project. Keio University, Tokyo, Japan. Kitano Symbiotic Systems Project. Center for Advanced Medical Engineering and Informatics. Osaka University, Osaka, Japan. COR (Cellular Open Source).

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physiome.org

JSim Home Page

http://physiome.org/jsim

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. Bibliography of JSim related work. JSim downloads are available as precompiled binaries. Linux, MacIntosh, Windows) or source code. JSim can also run as an applet. Within your web browser. JSim is provided free for non-commercial use as a public service by the National Simulation Resource. At the University of Washington. JSim 2.16 released (10 Dec 2015): release notes.

bioeng.washington.edu

JSim Home Page

http://bioeng.washington.edu/jsim

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. Bibliography of JSim related work. JSim downloads are available as precompiled binaries. Linux, MacIntosh, Windows) or source code. JSim can also run as an applet. Within your web browser. JSim is provided free for non-commercial use as a public service by the National Simulation Resource. At the University of Washington. JSim 2.16 released (10 Dec 2015): release notes.

imagwiki.nibib.nih.gov

MSM Participants | Interagency Modeling and Analysis Group

https://imagwiki.nibib.nih.gov/content/msm-participants

Skip to main content. Interagency Modeling and Analysis Group. Geoffrey Abbott, Ph.D. Predictive MSM of Atrial Fibrillation for Therapy Development. Gary An, M.D. EMT/BSSE: Hierarchical Representation and Simulation of Modular Cellular Systems. Kurt Anderson, Ph.D. Framework for the Adaptive Multiscale Modeling of Biopolymers. Russ Altman, M.D., Ph.D. Physics-Based Simulation of Biological Structures. Bridging multiple scales in modeling targeted drug nanocarrier delivery. Victor Barocas, Ph.D. National ...

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nsr.bioeng.washington.edu

Welcome to the NSR Physiome Project!

This page will look better in a graphical browser that supports web standards. But is accessible to any browser or internet device. The Physiome Project Provides. Genome, proteome, morphome. Functional behavior of molecules and biological systems. Observations of intact cellular systems, organs, and intact organisms. Integration and consilience of knowledge. Schema of interactions (descriptive models). Quantitative descriptions of relationship (casual, statistical, mechanistic). Web operation of models.

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