ontofox.hegroup.org

Ontofox

Is a web-based Onto. Logy tool that f. Ntology terms and a x. Ioms Ontofox supports ontology reuse. It allows users to input terms, fetch selected properties, annotations, and certain classes of related terms from source ontologies and save the results using the RDF/XML serialization of the OWL. Ontofox follows and expands the MIREOT. We have now changed the name OntoFox (with capital F) to Ontofox (with low case f) to be consistent with other Ontoanimal tools. 1 Data input using web forms:. Beta Cell Ge...

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Ontofox | ontofox.hegroup.org Reviews

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Is a web-based Onto. Logy tool that f. Ntology terms and a x. Ioms Ontofox supports ontology reuse. It allows users to input terms, fetch selected properties, annotations, and certain classes of related terms from source ontologies and save the results using the RDF/XML serialization of the OWL. Ontofox follows and expands the MIREOT. We have now changed the name OntoFox (with capital F) to Ontofox (with low case f) to be consistent with other Ontoanimal tools. 1 Data input using web forms:. Beta Cell Ge...

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introduction,tutorial,faqs,references,download,links,acknowledge,news,ontofox,etches o,note,notice,examples example 1,example 2,example 3,example 4,example 5,agronomy ontology agro,bilateria anatomy bila,brucellosis ontology idobru,cell ontology cl

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Ontofox | ontofox.hegroup.org Reviews

https://ontofox.hegroup.org

Is a web-based Onto. Logy tool that f. Ntology terms and a x. Ioms Ontofox supports ontology reuse. It allows users to input terms, fetch selected properties, annotations, and certain classes of related terms from source ontologies and save the results using the RDF/XML serialization of the OWL. Ontofox follows and expands the MIREOT. We have now changed the name OntoFox (with capital F) to Ontofox (with low case f) to be consistent with other Ontoanimal tools. 1 Data input using web forms:. Beta Cell Ge...

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ontofox.hegroup.org

1

OntoFox

http://ontofox.hegroup.org/acknowledge.php

The OntoFox software is primarily developed by Yongqun Oliver He's group at the University of Michigan Medical School, which was supported by NIH-NIAID grant R01AI081062, and by a Rackham Pilot Research grant at the University of Michigan. Our collaborator Alan Ruttenberg is a Principal Scientist at Science Commons. University of Michigan Medical School. Ann Arbor, MI 48109.

2

OntoFox

http://ontofox.hegroup.org/index.php

Is a web-based Onto. Logy tool that F. Ntology terms and a x. Ioms OntoFox supports ontology reuse. It allows users to input terms, fetch selected properties, annotations, and certain classes of related terms from source ontologies and save the results using the RDF/XML serialization of the OWL. OntoFox follows and expands the MIREOT. OntoFox is implemented using one of the following three methods, based on how data is input and whether the OntoFox web interface is used:. 1 Data input using web forms:.

3

OntoFox

http://ontofox.hegroup.org/tutorial/index.php

Here we provide a tutorial of how OntoFox can be applied for your research and ontology development:. Many more details about OntoFox and how to use it can be found from our OntoFox manuscript: PubMed ID: 20569493. Source Ontologies and their namespaces. OntoFox execution using web input forms. OntoFox data input format. Four directives used in OntoFox. Four settings used in OntoFox. OntoFox use case demonstrations. Import an OntoFox output file into a target ontology. Common Anatomy Reference Ontology.

4

OntoFox

http://ontofox.hegroup.org/references.php

Please Cite OntoFox (http:/ ontofox.hegroup.org):. Xiang Z, Courtot M, Brinkman RR, Ruttenberg A, He Y. OntoFox: web-based support for ontology reuse. OntoFox software demonstration Citations:. Xiang Z, Lin Y, He Y. OntoFox and its Application in Development of Brucellosis Ontology. The second International Conference on Biomedical Ontologies (ICBO), University at Buffalo, NY, July 26-30, 2011. Software Demonstration. Xiang Z, He Y. OntoFox: A web server for ontology information retrieval. Smith B, Ashbu...

5

OntoFox

http://ontofox.hegroup.org/feedback/index.php

Submitting feedback to the OntoFox team allows us to enhance the system for the best possible user experience. Please take a few minutes to let us know what you think. You may be contacted via email from us. Thank you. University of Michigan Medical School. Ann Arbor, MI 48109.

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hegroup.org

Welcome to He Group Webpage

http://www.hegroup.org/index.php

Welcome to hegroup.org! Welcome to the home page of Dr. Yongqun Oliver He. S laboratory research group at the University of Michigan! We do both dry-lab (bioinformatics lab) and wet-lab (microbiology and immunology lab) biomedical research. Our primary bioinformatics research has many topics: (1) Ontology development. Dr He has initiated and led the development of several community-based ontologies, including Vaccine Ontology. VO), Ontology of Adverse Events. OAE), Ontology of Genes and Genomes. Vaccine ...

hegroup.org

He Group Bioinformatics Projects

http://www.hegroup.org/projects.html

We do both bioinformatics (dry-lab). A He Group bioinformatics projects:. Our bioinformatics research focus is to develop ontologies, ontology-based tools, databases, and analysis systems for addressign various biomedical questions. Our primary bioinformatics research has many topics:. Dr He has initiated and led the development of the community-based Vaccine Ontology. VO) and Ontology of Adverse Events. We have developed many ontology tools. With a focus on ontology-based literature mining approaches.

obi-ontology.org

Conference call developers agenda - OBI Ontology

http://obi-ontology.org/page/Conference_call_developers_agenda

Conference call developers agenda. Conference Call Agenda Items. 2 Clinical trial use case. Conference Call Agenda Items. July 4: Cancelled due to Holiday. June 27: Dan B. Jan 18: Cancelled for Martin Luther King Day. Dec 28: Cancelled for Christmas. Sept 7: cancelled for Labor Day. July 27: ICBO - no call. June 22: Marcus - minutes. June 1: Jie - Gully, presentation. May 25: canceled (Holiday). April 20: tentatively cancel. April 13: Jie (joined by Ramona / BCO). March 2: Chris Stoeckert - Tracker items.

linkingresearch.wordpress.com

2013 November « Linking Research

https://linkingresearch.wordpress.com/2013/11

Getting started with Docker: Modularizing your software in data-oriented experiments. How to (easily) publish your ontology permanently: OnToolgy and w3id. Towards a human readable maintainable ontology documentation. Dagstuhl seminar report: Reproducibility of Data-Oriented Experiments in e-Science. Archive for November, 2013. How to (properly) publish a vocabulary or ontology in the web (part 6 of 6). On November 11, 2013. In order to avoid this issue, you can either import. Which way is better? It dep...

subluminal.wordpress.com

ICBO 2014 Report, Day 1 | Subluminal Messages

https://subluminal.wordpress.com/2014/10/06/icbo-2014-report-day-1

A science blog for all scientists, even amateurs. Skip to primary content. ICBO 2014 Report, Day 1. October 6, 2014. ICBO has gotten off to a good start with a tutorial and three workshops. I mostly spent the day in the workshops, but the tutorial ( OBO Tutorial: Getting Things Done with Open Biological and Biomedical Ontologies. Introduces a number of interesting new tools, including Ontofox. These complement the linked data ontology browsing tool Ontobee. Using the Ontology for Biomedical Investigations.

subluminal.wordpress.com

jpmccusker | Subluminal Messages

https://subluminal.wordpress.com/author/jpmccusker

A science blog for all scientists, even amateurs. Skip to primary content. Skip to secondary content. SpaceX is Making History. June 28, 2015. Some quick thoughts on SpaceX’s attempt today:. This is their first launch failure. Whenever something doesn’t work as expected these guys really dig in to figure out what went wrong, and make sure it never happens again. Make your own π. March 14, 2015. Click on the image below to use this jsFiddle to calculate your very own approximation of π for Pi day:. It als...

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ontofox.hegroup.org

Ontofox

Is a web-based Onto. Logy tool that f. Ntology terms and a x. Ioms Ontofox supports ontology reuse. It allows users to input terms, fetch selected properties, annotations, and certain classes of related terms from source ontologies and save the results using the RDF/XML serialization of the OWL. Ontofox follows and expands the MIREOT. We have now changed the name OntoFox (with capital F) to Ontofox (with low case f) to be consistent with other Ontoanimal tools. 1 Data input using web forms:. Beta Cell Ge...

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