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OPSIN: Open Parser for Systematic IUPAC Nomenclature

OPSIN: Open Parser for Systematic IUPAC nomenclature. Centre for Molecular Informatics. Updated 2018-02-28: This webservice is now using HTTPS. If you have found OPSIN useful in your work citing our paper. Would be very much appreciated. Depiction courtesy of the Indigo Toolkit. Enter a chemical name into the box and then click submit. The chemical structure described by the name, or why it could not be interpreted, will appear here. Journal Article (Free access).

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OPSIN: Open Parser for Systematic IUPAC Nomenclature | opsin.ch.cam.ac.uk Reviews
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OPSIN: Open Parser for Systematic IUPAC nomenclature. Centre for Molecular Informatics. Updated 2018-02-28: This webservice is now using HTTPS. If you have found OPSIN useful in your work citing our paper. Would be very much appreciated. Depiction courtesy of the Indigo Toolkit. Enter a chemical name into the box and then click submit. The chemical structure described by the name, or why it could not be interpreted, will appear here. Journal Article (Free access).
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OPSIN: Open Parser for Systematic IUPAC Nomenclature | opsin.ch.cam.ac.uk Reviews

https://opsin.ch.cam.ac.uk

OPSIN: Open Parser for Systematic IUPAC nomenclature. Centre for Molecular Informatics. Updated 2018-02-28: This webservice is now using HTTPS. If you have found OPSIN useful in your work citing our paper. Would be very much appreciated. Depiction courtesy of the Indigo Toolkit. Enter a chemical name into the box and then click submit. The chemical structure described by the name, or why it could not be interpreted, will appear here. Journal Article (Free access).

INTERNAL PAGES

opsin.ch.cam.ac.uk opsin.ch.cam.ac.uk
1

Instructions for Web Service

https://opsin.ch.cam.ac.uk/instructions.html

Instructions for Web Service. Centre for Molecular Informatics. The OPSIN web interface can be utilised in three ways:. Simply enter a chemical name into the web form and chemical representations will be returned. By requesting a particular output using file extensions:. The web service resides at http:/ opsin.ch.cam.ac.uk/opsin/ . A request to that URL concatenated with the URL encoded chemical name will give a structure where the representation chosen is decided by the extension:. Png gives a depiction.

2

OPSIN: Open Parser for Systematic IUPAC Nomenclature

https://opsin.ch.cam.ac.uk/index.html

OPSIN: Open Parser for Systematic IUPAC nomenclature. Centre for Molecular Informatics. Updated 28/8/16: Made warning/error messages more visible. If you have found OPSIN useful in your work citing our paper. Would be very much appreciated. Depiction courtesy of the Indigo Toolkit. Enter a chemical name into the box and then click submit. The chemical structure described by the name, or why it could not be interpreted, will appear here. Journal Article (Free access). Centre for Molecular Informatics.

3

About OPSIN

https://opsin.ch.cam.ac.uk/information.html

Centre for Molecular Informatics. During the development of OSCAR. The need to have a program to convert identified chemical names to connection tables arose. Due to the absence of any open source efforts with broad coverage of organic nomenclature work was started by Peter Murray-Rust and Joe Townsend on such a program. This work was continued by Peter Corbett cumulating in the creation of a system broadly similar to the current incarnation (Corbett and Murray-Rust 2006). Trivial acids and derivatives.

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A supplier of advanced chemicals worldwide. Create a new account. Search and Inquire chemicals online. Screening compounds, Building blocks, Natural products, Custom synthesis. Search, Select and Inquire. 20 million chemicals online. Reference, SMILES, CAS number. Help: how to use Ambinter website? With Ambinter website, you can search, select and inquire molecules directly online. Our home page allows you to search in our 20 millions compounds database by text. By drawing a molecule. It is a notation us...

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General Inquiries: info@nextmovesoftware.com. NextMove Software was founded in 2010 to develop next-generation chemoinformatics solutions to pharmaceutical industry problems. The company is located on the Cambridge Science Park in the United Kingdom. For updates, you can follow NextMove Software on SlideShare. Roger A. Sayle, Ph.D., CEO and Founder. Daniel M. Lowe, Ph.D., Senior Software Engineer. An Open Parser for Systematic IUPAC Nomenclature and the automated extraction of reactions from patents.

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Free services all around molecules. This page lets you easily convert compound names, IUPAC names, SMILES codes and CAS numbers into chemical structures. On the back end it employs the OPSIN. Java library from the University of Cambridge, the CACTUS. Online service provided by the National Cancer Institute and openmolecules software. 3D structure images are random low energy conformers rendered on-the-fly using the ray tracing engine SunFlow (see example below). Substance name, CAS-No, Smiles:.

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Sunday, June 8, 2014. Analysis of chemical names. Turns out the linguistic structure of chemical names is non-trivial. Unfortunately, as it's also quite profitable, it all seems to be behind paywalls, but I'm visiting Bloomington this summer and will have the opportunity to spend some time in the library, so this is one of the things I hope to make some headway on. In the meantime, here's a paywalled article. Ah - silly me. A search on "Name Struct open source" quickly returns OPSIN.

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OSCAR4 Launch - Murray-Rust Group

http://www-pmr.ch.cam.ac.uk/wiki/OSCAR4_Launch

Log in with Raven. Centre for Molecular Science Informatics. Open Source Chemistry Analysis Routines) is an open source extensible system for the automated annotation of chemistry in scientific articles. It can be used to identify chemical names, reaction names, ontology terms, enzymes and chemical prefixes and adjectives. In addition, where possible, any chemical names detected will be annotated with structures derived either by lookup, or name-to-structure parsing using OPSIN [1]. 1225 - BalaKrishna Ko...

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OPSIN: Open Parser for Systematic IUPAC Nomenclature

OPSIN: Open Parser for Systematic IUPAC nomenclature. Centre for Molecular Informatics. Updated 2018-02-28: This webservice is now using HTTPS. If you have found OPSIN useful in your work citing our paper. Would be very much appreciated. Depiction courtesy of the Indigo Toolkit. Enter a chemical name into the box and then click submit. The chemical structure described by the name, or why it could not be interpreted, will appear here. Journal Article (Free access).

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