orthomcl.org orthomcl.org

orthomcl.org

OrthoMCL

Protein Sequences: 1,398,546. Ortholog Groups: 124,740. Letter to the EuPathDB Community. OrthoMCL 5 Strategies-WDK version released (beta). Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Clusters of Orthologous Groups. MetaPhOrs: phylogeny-based orthology and paralogy prediction. PhylomeDB: collections of gene phylogenies. Exercises from our most recent Workshop. NCBI's Glossary of Terms. PFam ID or Keyword. Avg % Match Length. PFam ID or Keyword. Assign your proteins to groups.

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OrthoMCL | orthomcl.org Reviews
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Protein Sequences: 1,398,546. Ortholog Groups: 124,740. Letter to the EuPathDB Community. OrthoMCL 5 Strategies-WDK version released (beta). Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Clusters of Orthologous Groups. MetaPhOrs: phylogeny-based orthology and paralogy prediction. PhylomeDB: collections of gene phylogenies. Exercises from our most recent Workshop. NCBI's Glossary of Terms. PFam ID or Keyword. Avg % Match Length. PFam ID or Keyword. Assign your proteins to groups.
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1 data summary
2 news and tweets
3 orthomcl 5 released
4 orthomcl 4 released
5 orthomcl 3 released
6 orthomcl 2 released
7 all orthomcl news
8 tweets by @eupathdb
9 community resources
10 related sites
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data summary,news and tweets,orthomcl 5 released,orthomcl 4 released,orthomcl 3 released,orthomcl 2 released,all orthomcl news,tweets by @eupathdb,community resources,related sites,mammalian orthology,ensembl,eggnog,fungal orthogroups repository,english
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OrthoMCL | orthomcl.org Reviews

https://orthomcl.org

Protein Sequences: 1,398,546. Ortholog Groups: 124,740. Letter to the EuPathDB Community. OrthoMCL 5 Strategies-WDK version released (beta). Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Clusters of Orthologous Groups. MetaPhOrs: phylogeny-based orthology and paralogy prediction. PhylomeDB: collections of gene phylogenies. Exercises from our most recent Workshop. NCBI's Glossary of Terms. PFam ID or Keyword. Avg % Match Length. PFam ID or Keyword. Assign your proteins to groups.

INTERNAL PAGES

orthomcl.org orthomcl.org
1

OrthoMCL

http://orthomcl.org/orthomcl/serviceList.jsp

NCBI's Glossary of Terms. Search for Groups by:. PFam ID or Keyword. Avg % Match Length. Search for Sequences by:. PFam ID or Keyword. Assign your proteins to groups. Publications that mention OrthoMCL. Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Searches via Web Services. OrthoMCL provides programmatic access to its searches. Web Services. The result of a web service request is a list of records (genes, ESTs, etc) in either XML. For example, this URL:. Corresponds to this request:.

2

My Strategies

http://orthomcl.org/orthomcl/showApplication.do;jsessionid=9B7777E275AA1C4DA1D4196B48B96979

NCBI's Glossary of Terms. Search for Groups by:. PFam ID or Keyword. Avg % Match Length. Search for Sequences by:. PFam ID or Keyword. Assign your proteins to groups. Publications that mention OrthoMCL. Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Never show me this again. If this section is empty after the page is fully loaded, please click on a step to view its results in this section.). It means it needs to be revised. Please open strategies marked with. Note: There is a 4,000 ch...

3

OrthoMCL :: About

http://orthomcl.org/orthomcl/about.do

NCBI's Glossary of Terms. Search for Groups by:. PFam ID or Keyword. Avg % Match Length. Search for Sequences by:. PFam ID or Keyword. Assign your proteins to groups. Publications that mention OrthoMCL. Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! The genome data for this release was acquired from these Genome Sources. The number of sequences and groups in each genome is shown in the Genome Statistics. Go to the download site. See the OrthoMCL Algorithm Document. Is invoked to split...

4

Upload your own Proteome

http://orthomcl.org/orthomcl/proteomeUpload.do;jsessionid=9B7777E275AA1C4DA1D4196B48B96979

NCBI's Glossary of Terms. Search for Groups by:. PFam ID or Keyword. Avg % Match Length. Search for Sequences by:. PFam ID or Keyword. Assign your proteins to groups. Publications that mention OrthoMCL. Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Assign your proteins to OrthoMCL Groups. Use this tool to provisionally assign the proteins in a genome to OrthoMCL Groups. Upload your genome's proteins as a FASTA file. Once a job starts. Please do not resubmit your job. For proteins tha...

5

OrthoMCL

http://orthomcl.org/cgi-bin/OrthoMclWeb.cgi

NCBI's Glossary of Terms. Search for Groups by:. PFam ID or Keyword. Avg % Match Length. Search for Sequences by:. PFam ID or Keyword. Assign your proteins to groups. Publications that mention OrthoMCL. Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Protein Sequences: 1,398,546. Ortholog Groups: 124,740. Letter to the EuPathDB Community. OrthoMCL 5 Strategies-WDK version released (beta). Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Clusters of Orthologous Groups.

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schistodb.net schistodb.net

SchistoDB : The Schistosoma Genomics Resource

http://schistodb.net/schisto/queries_tools.jsp;jsessionid=9E0E8732FD18C5146D05587B20AF4BE4

Publications on EuPathDB sites. Submitting data to SchistoDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Extent of Gene Overlap. Search for Metabolic Pathways. Text (synonym, InChI, etc.). View all available searches. Searches via Web Services.

fungidb.org fungidb.org

Search for Genes by Gene ID(s)

http://fungidb.org/fungidb/showQuestion.do?questionFullName=GeneQuestions.GeneByLocusTag

Publications on EuPathDB sites. Submitting data to FungiDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Differences Within a Group of Isolates. Differences Between Two Groups of Isolates. The ID...

giardiadb.org giardiadb.org

Search for Genes by Gene ID(s)

http://giardiadb.org/giardiadb/showQuestion.do?questionFullName=GeneQuestions.GeneByLocusTag

Publications on EuPathDB sites. Submitting data to GiardiaDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Mass Spec. Evidence. Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Extent of Gene Overlap. Search for SAGE Tags. New Data Sets page!

fungidb.org fungidb.org

FungiDB :: Data Submission

http://fungidb.org/fungidb/dataSubmission.jsp

Publications on EuPathDB sites. Submitting data to FungiDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Differences Within a Group of Isolates. Differences Between Two Groups of Isolates. High T...

giardiadb.org giardiadb.org

GiardiaDB : The Giardia Genomics Resource

http://giardiadb.org/giardiadb/showApplication.do

Publications on EuPathDB sites. Submitting data to GiardiaDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Mass Spec. Evidence. Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Extent of Gene Overlap. Search for SAGE Tags. New Data Sets page!

fungidb.org fungidb.org

FungiDB: The Fungal and Oomycete Genomics Resource

http://fungidb.org/fungidb/categoryPage.jsp?record=GeneRecordClasses.GeneRecordClass&category=other_attributes

Publications on EuPathDB sites. Submitting data to FungiDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Differences Within a Group of Isolates. Differences Between Two Groups of Isolates. Only a...

fungidb.org fungidb.org

FungiDB: The Fungal and Oomycete Genomics Resource

http://fungidb.org/fungidb/showApplication.do

Publications on EuPathDB sites. Submitting data to FungiDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Differences Within a Group of Isolates. Differences Between Two Groups of Isolates. When a...

fungidb.org fungidb.org

FungiDB :: Analysis Tools

http://fungidb.org/fungidb/analysisTools.jsp

Publications on EuPathDB sites. Submitting data to FungiDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Differences Within a Group of Isolates. Differences Between Two Groups of Isolates. When t...

fungidb.org fungidb.org

FungiDB Download Files

http://fungidb.org/common/downloads

Publications on EuPathDB sites. Submitting data to FungiDB. How to submit data to us. EuPathDB Data Submission and Release Policies. How to cite us. Publications that Use our Resources. EuPathDB Brochure in Chinese. NCBI's Glossary of Terms. Text, IDs, Organism. Text (product name, notes, etc.). Text (search product name, notes, submitter etc.). Search for Genomic Sequences. Search for Genomic Segments (DNA Motif). Differences Within a Group of Isolates. Differences Between Two Groups of Isolates. If you...

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Protein Sequences: 1,398,546. Ortholog Groups: 124,740. Letter to the EuPathDB Community. OrthoMCL 5 Strategies-WDK version released (beta). Follow us on Twitter! Follow us on Facebook! Follow us on YouTube! Clusters of Orthologous Groups. MetaPhOrs: phylogeny-based orthology and paralogy prediction. PhylomeDB: collections of gene phylogenies. Exercises from our most recent Workshop. NCBI's Glossary of Terms. PFam ID or Keyword. Avg % Match Length. PFam ID or Keyword. Assign your proteins to groups.

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