PANDORA offers biological annotation-based analysis of protein sets. Integration of annotation sources and intersection-inclusion DAG allow meaningful biological interpretation. keywords: proteins bioinformatics annotations proteomics computational molecular biology
http://pandora.cs.huji.ac.il/
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Pandora | pandora.cs.huji.ac.il Reviews
https://pandora.cs.huji.ac.il
PANDORA offers biological annotation-based analysis of protein sets. Integration of annotation sources and intersection-inclusion DAG allow meaningful biological interpretation. keywords: proteins bioinformatics annotations proteomics computational molecular biology
pandora.cs.huji.ac.il
Pandora
http://pandora.cs.huji.ac.il/about.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Pandora version 4.2. Department of Biological Chemistry, Institute of Life Sciences. Hebrew University, Jerusalem, Israel. School of Computer Science and Enigineering. Hebrew University, Jerusalem, Israel. You can contact us through this mail form. Kaplan N, Vaaknin A and Linial M. (2003). PANDORA: keyword-based analysis of protein sets by integration of annotation sources.
Pandora
http://pandora.cs.huji.ac.il/index.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Welcome to Pandora version 4.2! In order to study of proteins you can choose from the top menubar:. Study a set of proteins that share an annotation. Study your own set of proteins including quantitative data. Blast a sequence and view the results in PANDORA. Match list of mass spectrometry-derived (MS) peptides to the corresponding proteins and analyze these proteins in PANDORA.
Pandora
http://pandora.cs.huji.ac.il/help.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Was developed in order to allow in-depth biological analysis of such large protein sets. This is obtained through annotation analysis, with the implementation of two main ideas: representation of all protein-keyword relations with a Concept DAG (Directed Acyclic Graph). Is based on the proteins that appear in the UniProtKB/Swiss-Prot database and UniProtKB/TrEMBL. Is based on t...
Pandora
http://pandora.cs.huji.ac.il/userset.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Study your own set of proteins ( see help. For further information on file formats etc, see the help sections on input methods. And on user properties. Or you may also load sample data:. Simple list of Protein IDs. Protein IDs with user properties (CSV). Protein IDs with user properties (tab delimited). SwissProt/TrEMBL protein accession numbers. GenBank gene accession numbers.
Pandora
http://pandora.cs.huji.ac.il/blast.php
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. BLAST a protein sequence against the database and view the results in PANDORA ( see help. Protein sequence (raw sequence or FASTA format) to blast. Or you may also. Maximal number of matches:. Maximal number of alignments to display:. Updated Jan. 31st 2010 - Pandora. The Hebrew University of Jerusalem. This site is best viewed with Firefox.
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ClanTox
http://clantox.cs.huji.ac.il/about.php
A Classifier of Animal Toxins. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Toxins are proteins that are present in animal venom. They are extremely diverse in terms of sequence, structure and function. Toxins include several types of proteins such as ion channel inhibitors, phospholipases, disintegrins and others. To understand what these numbers signify, we must first explain the prediction process (see figure). Sequences given to ClanTox are first transformed ...
ClanTox
http://clantox.cs.huji.ac.il/faq.php
A Classifier of Animal Toxins. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Q: What is the standard deviation good for? Q: I got a positive score for my sequence, how can I tell whether the protein is toxin or toxin-like? Q: A sequence that I entered was classified as toxin or toxin-like. What does this mean? Q: In order to test your classifier, I entered a long sequence of cysteines and got a positive score. Is this bug? Q: What kind of classifiers do you use? A: Ge...
ClanTox
http://clantox.cs.huji.ac.il/tech.php
A Classifier of Animal Toxins. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. P3 - Toxin-like (mean score 0.2 or mean score 2*SD). P2 - Probably toxin-like (mean score 0.2 or 2*SD mean score SD). P1 - Possibly toxin-like (mean score -0.2 and mean score. N - Probably not toxin-like (mean score. Scheme of the meta-classifier underlying ClanTox. Results for the classifier performance. S locus-related glycoprotein 1 binding pollen coat. Whey acidic protein, core region.
ClanTox
http://clantox.cs.huji.ac.il/index.php
A Classifier of Animal Toxins. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. ClanTox is a classifier of animal toxins. Given a sequence, it predicts whether the sequence is a toxin or toxin-like protein. How to classify your sequence. The form below allows you to input your sequences: either paste the sequence in the text box or upload your file. Input sequences (FASTA format). Upload sequences (FASTA format). Sort results by Mean score. How to compile a sequence list.
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Pandora
Protein ANnotation Diagram ORiented Analysis. The Sudarsky Center for Computational Biology. The Hebrew University of Jerusalem. Welcome to Pandora version 4.2! In order to study of proteins you can choose from the top menubar:. Study a set of proteins that share an annotation. Study your own set of proteins including quantitative data. Blast a sequence and view the results in PANDORA. Match list of mass spectrometry-derived (MS) peptides to the corresponding proteins and analyze these proteins in PANDORA.
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Provoz všech služeb diskusního serveru. Pandora.cz byl k 1. 12. 2013 ukončen. Technická podpora serveru Pandora.cz.
Project Pandora
Dantarion reveals the science behind SFxT. What is Project Pandora. Project Pandora is a reverse engineering project started by Dantarion to understand the files that make up the "Pandora's Box" that is Street Fighter X Tekken. By examining the game's files, we can not only gain insight about the game itself, but how the developers at Capcom put it together in the first place. What isn't Project Pandora. What are the main goals of Project Pandora? What about the Brady guide? What is the point.
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Pandora End of Line Mixing. The compact feeding and mixing concept. Mixing quickly, carefully and extremely homogeneously. Feeding with the highest possible precision. Preventing product loss and rework. Continuous mixing processes are frequently accompanied by product loss or rework during the initial and final phases. This can be very annoying, especially when working with expensive ingredients. Using an ingenious combination of feeders with fast reaction times and a volume control system in th...Pando...
