candidagenome.org
How to cite CGD
http://www.candidagenome.org/HowToCite.shtml
Laboratory Strains and Lineage. How to cite CGD. The basic format for citing electronic resources is:. Author's Last Name, First Name. "Title of Work." Title of Complete Work. [protocol and address] [path](date of message or visit). The following are examples that can be used to cite CGD. To cite CGD files obtained via the World Wide Web:. Arnaud MB, Inglis DO, Skrzypek MS, Binkley J, Shah P, Wymore F, Binkley G, Miyasato SR, Simison M, and Sherlock G. Date information was obtained). 2013 Jan; 12(1).
candidagenome.org
Summary of Chromosome Sequence and Annotation Updates
http://www.candidagenome.org/cgi-bin/chromosomeHistory.pl
Laboratory Strains and Lineage. Summary of Chromosome Sequence and Annotation Updates. As new data become available, CGD curators update the systematic sequence and its annotation. This table summarizes the sequence and/or annotation updates made for each root sequence, since the intitial release. If you are aware of additional sequence or annotation changes that should be made to the reference sequence, please send a message to CGD curators. Related species and strains at CGD. Ca22chr1A C albicans SC5314.
candidagenome.org
Phenotype Terms
http://www.candidagenome.org/cache/PhenotypeTree.html
Laboratory Strains and Lineage. This page displays all the phenotype terms currently in use at CGD. Click on a phenotype term to see the genes associated with that term. Cell cycle progression in G1 phase. Cell cycle passage through START. Cell cycle progression in G2 phase. Cell cycle progression in M phase. Cell cycle passage through the metaphase-anaphase transition. Cell cycle progression in anaphase. Cell cycle progression in early anaphase. Cell cycle progression in late anaphase. Critical cell siz...
candidagenome.org
Sequence
http://www.candidagenome.org/SequenceContents.shtml
Laboratory Strains and Lineage. Search, analyze, and download sequence information from the Candida Genome Database. Retrieve, display, and analyze sequence information. Locate DNA or protein sequence patterns. Design sequencing and PCR primers. Retrieve files of bulk sequence information for Candida genomes. Including chromosome, gene, intergenic, and protein sequence files. Simultaneous retrieval of multiple types of data for a list of gene or feature names. Send a Message to the CGD Curators.
candidagenome.org
CGD Pattern Matching
http://www.candidagenome.org/cgi-bin/PATMATCH/nph-patmatch
Laboratory Strains and Lineage. Pattern Matching allows you to search for short (. If you are searching for a sequence 20 bp or aa with no degenerate positions, please use BLAST, which is much faster. Pattern Matching allows for ambiguous characters, mismatches, insertions and deletions, but does not do alignments and so is not a replacement for BLAST. Please note, also, that PatMatch will not find overlapping hits. Your comments and suggestions are appreciated: Send a Message to CGD. If DNA, Strand:.
candidagenome.org
Tools
http://www.candidagenome.org/ToolContents.shtml
Laboratory Strains and Lineage. Simultaneous retrieval of multiple types of data for a list of gene or feature names. Search or browse pathway information in CGD, including pathways, reactions, enzymes, and chemical compounds. Browse phenotype terms used for annotation in CGD. Compare any query sequence against various Candida. Annotation statistics for C. albicans. In CGD, updated daily. Annotation statistics for C. dubliniensis. In CGD, updated daily. Annotation statistics for C. glabrata.
candidagenome.org
Web Primer: DNA and Purpose Entry
http://www.candidagenome.org/cgi-bin/compute/web-primer
Laboratory Strains and Lineage. Web Primer: DNA and Purpose Entry. Enter the DNA Sequence (numbers are OK, but comments should be removed). Purpose: PCR or Sequencing [info]. Send a Message to the CGD Curators. Please use the following reference. Inglis DO, Arnaud MB, Binkley J, Shah P, Skrzypek MS, Wymore F, Binkley G, Miyasato SR, Simison M, Sherlock G. (2012). The Candida. Genome Database incorporates multiple Candida. D667-74; see How to cite CGD.
candidagenome.org
CGD Gene Ontology Term Finder
http://www.candidagenome.org/cgi-bin/GO/goTermFinder
Laboratory Strains and Lineage. CGD Gene Ontology Term Finder. The GO Term Finder searches for significant shared GO terms, or parents. Of those GO terms, used to describe the genes in your list to help you discover what the genes may have in common. To map annotations of a group of genes to more general terms and/or to bin them in broad categories, use the GO Slim Mapper. All genes/features in the database. Annotations from all sources and made with all evidence codes. Only hits with p-value. Inglis DO,...
candidagenome.org
Summary of Genome Versions
http://www.candidagenome.org/cgi-bin/genomeVersionHistory.pl
Laboratory Strains and Lineage. Summary of Genome Versions. The version designation appears in the name of each of the relevant sequence files that are available at CGD, so the exact source of the sequence data is always clear. This version system was first implemented for A. nidulans. In AspGD on February 5, 2010. The same system of version designation is used for version tracking for the chromosomal sequence and genome annotation of other species, as they are added into CGD, as described here. Minor re...
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