pdb.tau.ac.il
OCA browser-database for protein structure/functionocamain 2.36 by Prilusky
http://pdb.tau.ac.il/
ocamain 2.36 by Prilusky
http://pdb.tau.ac.il/
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OCA browser-database for protein structure/function | pdb.tau.ac.il Reviews
https://pdb.tau.ac.il
ocamain 2.36 by Prilusky
pdb.tau.ac.il
OCA Help
http://pdb.tau.ac.il/oca-docs/oca_help.html
This version of OCA adds the functionality of Boolean searches and wild card. Characters to 'extend' the search. The various fields shown on the OCA Advanced Search screen will be ANDed together before searching. All fields are insensitive to case. It is a good idea to use the "Clear form" button before initiating any new searches. Once the constraints are set, click on the "Search" button to begin. The full text searches used by OCA are based on the Glimpse. Indexing and query system. Following a search...
OCA© Targets
http://pdb.tau.ac.il/oca-docs/links.html
OCA dynamically creates links to the following resources. Contacts of Structural Units) Analysis of interatomic contacts in PDB entries. Families of Structurally Similar Proteins. Dipole moments of proteins. Collection of information about the genes, proteins, and intergenic regions of the E. coli K-12 genome and proteome. Database of the Drosophila Genome. Database of human genes, their products and their involvement in diseases. Information system for G protein-coupled receptors. IMB Jena Image Library.
OCA browser-database for protein structure/function
http://pdb.tau.ac.il/oca-docs/oca-home.html
A browser-database for protein structure/function. Oca is the spanish word for goose. As Merriam-Webster says "goose: any of numerous large waterfowl (family Anatidae) that are intermediate between the swans and ducks and have long necks, feathered lores, and reticulate tarsi"). Structure with most ligands). Structure with the longest chain). Structure with most domains). The largest ligands in PDB. C55 H85 N20 O21 S2. C48 H68 N17 O12 CO1 S2 1. C73 H91 N10 O26 CL2 3. C66 H77 N9 O24 CL2 2. C36 H60 O55 S9.
OCA mirrors
http://pdb.tau.ac.il/oca-docs/mirrors.html
OCA is being mirrored at the following 30. Bioinformatics Centre, India, University of Pune, Pune, India. Bio Molecular Engineering Research Center, USA, Boston University, MA, USA. North and Central America. Korea Institute of Science and Technology Information, Korea. EMBL Outstation, UK, European Bioinformatics Institute, UK. Interdisciplinary Centre for Mathematical and Computational Modelling, Polland, Warsaw University, Poland. Africa and Middle East. Tel Aviv University, Israel.
OCA© Sources
http://pdb.tau.ac.il/oca-docs/sources.html
OCA integrates data from the following sources that are of free access for Universities. If you plan to use OCA in a commercial environment or for profit, please be sure you have the proper clearance from OCA and all the OCA data sources. Information system for G protein-coupled receptors. Kyoto Encyclopedia of Genes and Genomes. Comprehensive catalog of inherited diseases. Orientations of Proteins in Membranes. Subset of the structures in the PDB that does not contain (highly) homolog sequences.
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OCA mirrors
http://oca.weizmann.ac.il/oca-docs/mirrors.html
OCA is being mirrored at the following 30. Bioinformatics Centre, India, University of Pune, Pune, India. Bio Molecular Engineering Research Center, USA, Boston University, MA, USA. North and Central America. Korea Institute of Science and Technology Information, Korea. EMBL Outstation, UK, European Bioinformatics Institute, UK. Interdisciplinary Centre for Mathematical and Computational Modelling, Polland, Warsaw University, Poland. Africa and Middle East. Tel Aviv University, Israel.
OCA mirrors
http://rcsb.icm.edu.pl/oca-docs/mirrors.html
OCA is being mirrored at the following 24. 11 public mirrors (and 14 hidden intranet mirrors). The Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia. Bioinformatics Centre, University of Pune, Pune, India. Bio Molecular Engineering Research Center, USA, Boston University, MA, USA. North and Central America. The Cambridge Crystallographic Data Centre, UK. EMBL Outstation, European Bioinformatics Institute, UK. Tel Aviv University, Israel. Africa and Middle East.
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OCA browser-database for protein structure/function
Enter either a PDB accession code ( 2ACE. A Gene Ontology id ( GO:0042135. An Interpro id ( IPR000997. A PubMed id ( 8989325. A CATH id ( 10mhA1. A PFam id ( PF00959. A Protein Ontology id ( PRO:000000090. Molecule name, class or family, or related term [ HEADER. Family name of depositor or author of associated publication [ AUTHOR. Any word in the complete PDB text. Gene designation (as in TP53,PDC. Function description related (as in accelerate, lesion). Bacterial Gram-negative inner membrane. For an i...
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