pdbtm.enzim.hu

mabit.ttk.mta.hu

.:HSB:.

http://www.mabit.ttk.mta.hu/doc/hu/society/resources/database

Magyarországi bioinformatikusok által fejlesztett és karbantartott adatbázisok. ARN, autofágia regulációs hálózati adatbázis. Korcsmáros Tamás (korcsmaros kukac netbiol pont elte pont hu). ELTE TTK Genetika Tsz. DT40 Genom: A csirke DT40 burzal limfóma sejtvonal gemonszekvenciája. A dt40 honlapon a csirke dt40 sejt de novo szekvenálási adatai találhatók, amelyek letölthetők, illetve BLAST-tal kereshető. Molnár János (molnar pont janos kukac ttk pont mta pont hu). MTA TTK Enzimológiai Intézet. A HAEdb egy...

opm.phar.umich.edu

Species - Orientations of Proteins in Membranes (OPM) database

http://opm.phar.umich.edu/species.php

PDB ID or protein name. All proteins in OPM. Acanthoscurria gomesiana (Tarantula spider). Actinia fragacea (Strawberry anemone). Aedes aegypti (Yellowfever mosquito). Ambystoma tigrinum (Tiger salamander). Amycolatopsis orientalis (Nocardia orientalis). Androctonus australis (Sahara scorpion). Androctonus mauretanicus mauretanicus (Scorpion). Anguilla japonica (Japanese eel). Anopheles gambiae (African malaria mosquito). Anthopleura elegantissima (Sea anemone). Avian infectious bursal disease virus.

polyview.cchmc.org

POLYVIEW-MM - Explorer of molecular motions

http://polyview.cchmc.org/conform.html

Analysis and visualization of the ensembles of molecular models. Structural Data in 3D Coordinates ( Help. Get ID by keyword. Molecular structure in a custom coordinate file. Pdb (Protein Data Bank). 50 MB file size limit). Expected formats: NAMD and CHARMM=dcd/psf GROMACS=trr/gro). Type of conformational analysis. Ensemble of NMR models. Examples: 2kmv, 2kcj). Morph or low-frequency motion. MD or other trajectory. Examples: 1lo1, 2jpa). E-mail address ( optional.

proteus2.ca

Documentation for PROTEUS2 Structure Prediction Server

http://www.proteus2.ca/proteus2/documentation.jsp

PROTEUS Structure Prediction Server 2.0. Comprehensive 2D and 3D structure predictions. PROTEUS2 is a web server that allows prediction of secondary structure and tertiary structure with a high degree of accuracy, without the user having any prior knowledge of the structure of the protein. How to use PROTEUS2. How PROTEUS2 measures up. How to use PROTEUS2. PROTEUS2 will output the following items:. Graphical alignment of soluble PDB homologs. Graphical alignment of transmembrane PDB homologs. Tertiary st...

jit.usc.edu

JCIMPT Links Page

http://jit.usc.edu/links.html

Membrane Protein Structure Databases. MPDB: Membrane Protein Data Bank. S White's Membrane Proteins of Known 3D Structure. H Michel's Membrane Proteins of Known Structure. PDBTM: Protein Data Bank of Transmembrane Proteins. OPM: Orientations of Proteins in Membranes Database. The G protein-Coupled Receptor Database. GLIDA: GPCR ligand database. GPCR Natural Variants database. GpDB: G proteins and their interactions with GPCRs. SEVENS: GPCR genes database. KEGG: Kyoto Encyclopedia of Genes and Genomes.

opm.phar.umich.edu

Proteins - Orientations of Proteins in Membranes (OPM) database

http://opm.phar.umich.edu/proteins.php

PDB ID or protein name. All proteins in OPM. All proteins in OPM (3142 proteins). Num TM Sec. Structs. Hydrophobic Thickness or Depth (Å). Tilt Angle (°). Sensory rhodopsin, monomer. 319 ± 1.5. 13 ± 4. 318 ± 1.1. 0 ± 1. Sensory rhodopsin II, tetramer. 305 ± 1.1. 0 ± 0. 318 ± 1.4. 0 ± 1. 318 ± 1.3. 9 ± 2. Bacteriorhodopsin, K state, with lipids. 300 ± 0.6. 0 ± 0. Bacteriorhodopsin, trimer, complex with annular lipids. 298 ± 0.6. 0 ± 0. Sensory rhodopsin II, monomer. 303 ± 1.5. 15 ± 2. 296 ± 2.2. Squid rho...

opm.phar.umich.edu

Families - Orientations of Proteins in Membranes (OPM) database

http://opm.phar.umich.edu/families.php

PDB ID or protein name. All proteins in OPM. Microbial and algal rhodopsins. 35 proteins) 3.E.1 (TCDB). G-protein coupled receptors, family A. 74 proteins) 9.A.14 (TCDB). GPCR Secretin (B) family. 4 proteins) 9.A.14 (TCDB). 6 proteins) 9.A.14 (TCDB). GPCR Metabotropic glutamate receptor (C) family. 2 proteins) 9.A.14 (TCDB). 1 protein) 1.C.113 (TCDB). Photosynthetic reaction centers from bacteria. 5 proteins) 3.E.2 (TCDB). 6 proteins) 5.B.4 (TCDB). 6 proteins) 5.B.4 (TCDB). 1 protein) 5.A.3 (TCDB). Trans...

lipidat.tcd.ie

Other sites: LIPIDAT 1.0 WWW (c) 1996 OSURF

http://lipidat.tcd.ie/othersites.htm

Databases and Search Engines Related to Biomolecules. LDB - The Lipid Data Bank. LIPID BANK for Web - A Lipid Database Information Retrieval System, Tokyo, Japan. Lipid and Surfactant Suppliers. Proteins and Nucleic Acids. Databases and Tools for 3-D Protein Structure Comparison and Alignment Using the Combinatorial Extension (CE) Method. ExPASy - Sequence of Nucleic Acids and Proteins. Flexible structure AlignmenT by Chaining Aligned fragment pairs allowing Twists (FATCAT). Protein Data Bank (PDB).

canoz.com

BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE

http://www.canoz.com/benchmark/benchmark.pl

BENCHMARK OF MEMBRANE HELIX PREDICTIONS FROM SEQUENCE. This benchmark server allows you to compare membrane helix prediction and topology prediction methods that have made their predictions based on amino acid sequence. If you want to compare methods :. 1 Choose the methods you want to compare and/or upload your own predictions. 2 Select the benchmark dataset (standard or personalized). 3 Specify the benchmark criteria. 1 Choose the methods you want to compare and/or upload your own predictions:. 2 Selec...