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WebPeakr is a software to simulate 2D solid-state NMR spectra.

http://www.peakr.org/

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CONTACTS AT PEAKR.ORG

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Webpeakr | search | peakr.org Reviews
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WebPeakr is a software to simulate 2D solid-state NMR spectra.
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5 simulation
6 upload
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8 spectra
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10 protein name
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Webpeakr | search | peakr.org Reviews

https://peakr.org

WebPeakr is a software to simulate 2D solid-state NMR spectra.

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peakr.org peakr.org
1

Webpeakr | team

https://www.peakr.org/team

Dr Martin Kollmar, PI. Programming and providing specifications. May 2006 - Februar 2009. 169; Peakr Team 2017.

2

Webpeakr | upload_settings

https://www.peakr.org/upload_settings

Please select your file:. 169; Peakr Team 2017.

3

Webpeakr | help

https://www.peakr.org/help

Download this help page as PDF. Parameters to simulate spectra. Peakr is a software to simulate 2D solid-state NMR spectra. Parameters to simulate spectra. This section of the interface serves to initialize a protein, its chemical shifts, and the internuclear correlations of interest that define a spectrum. Once the required input parameters and data are specified, click on "Create spectrum" to initialize the spectrum. Simulated spectra will appear in the Added Spectra subsection. Chemical shifts can be ...

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sherekhan.bionmr.org sherekhan.bionmr.org

ShereKhan | Calculation

http://sherekhan.bionmr.org/app/calculation

Upload files or use Examples. Exchange Regime and Exchange Model. 169; ShereKhan Team 2016.

sherekhan.bionmr.org sherekhan.bionmr.org

ShereKhan | R2eff

http://sherekhan.bionmr.org/app/r2eff

Values are calculated for the two point sampling scheme that is commonly used for the CT- CPMG experiments described in Frans A. A. Mulder, Nikolai R. Skrynnikov, Bin Hon, Frederick W. Dahlquist, and Lewis E. Kay, J. Am. Chem. Soc., 2001, 123, 967 975. The R. Errors are derived using error propagation analysis based on the spectral noise. Define your experimental intensity data in this section. More then one file can be uploaded, each file representing data measured at different magnetic field.

sherekhan.bionmr.org sherekhan.bionmr.org

ShereKhan | Help

http://sherekhan.bionmr.org/app/help

Define your experimental data in this section. More then one file can be uploaded, each file representing data measured at different magnetic field. If data were measured at multiple field strengths, the residue types and numbers will be compared and chemical shift differences fitted globally to calculate kinetic parameters. The input-file should have the following format:. Value of the B. Field for the nuclei of interest in MHz (e.g. 60.12). The following lines contain the CPMG frequencies (. The fittin...

sherekhan.bionmr.org sherekhan.bionmr.org

ShereKhan | Team

http://sherekhan.bionmr.org/app/team

Priv Doz. Dr. Martin Kollmar, PI. Dr Donghan Lee, PI. 169; ShereKhan Team 2016.

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Webpeakr | search

Or get PDB by ID. If a sequence and a pdb file are provided, the sequences will be aligned and the longer sequence will be used. Shift list Prediction Database. Prediction - Shift list. Shifts from Sparky file. Shifts from ShiftX file. Shifts from CSV file. Shifts from BMRB entry. No BMRB entry selected. If several shift lists are uploaded, shifts will be added to the atoms in the following order:. Sparky list ShiftX list shifts from CSV file. A pdb file is needed for this correlation type.

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