PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry. It provides objects and methods for representing molecules, atoms, and bonds in Perl; doing substructure matching; and reading and writing files in various formats.
http://www.perlmol.org/
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PerlMol - Perl Modules for Molecular Chemistry | perlmol.org Reviews
https://perlmol.org
PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry. It provides objects and methods for representing molecules, atoms, and bonds in Perl; doing substructure matching; and reading and writing files in various formats.
perlmol.org
PerlMol - Reference Manual
http://www.perlmol.org/pod/index.html
PerlMol - Reference Manual. Here is the perldoc documentation for each module, converted to HTML. If you prefer, the whole thing is also available as one big (about 100 pages, 300 KB) PDF file: perlmol.pdf. Please note that this PDF file includes the documentation for the latest version of every module, which is not always the same as the version included in the latest PerlMol bundle. The contents of the latest PerlMol bundle are listed in the PerlMol chapter. PerlMol bundle description and contents.
PerlMol - Bugs and Requests
http://www.perlmol.org/bugs.html
PerlMol - Bugs and Requests. Please use SourceForge.net's Tracker to submit bug reports. If you are reporting a bug, please make sure you include the following:. Any and all error messages. Your perl version and platform (the output of. The version of every PerlMol module involved in the problem. The smallest code sample that can reproduce the problem. The smallest input file (if needed) that can reproduce the problem.
PerlMol - Download and Installation
http://www.perlmol.org/download.html
PerlMol - Download and Installation. There are three main ways of installing the PerlMol modules:. Automated installation using the CPAN.pm module. Recommended way for UNIX-compatible systems. Manual install of the PerlMol bundle. Alternative way if CPAN.pm is not an option for some reason. PPM package for Windows ActivePerl 5.8. Easiest way of installing under Windows. For developers that know what they are doing and are interested in trying the latest unreleased development versions. Untar it in a temp...
PerlMol - Chemistry::Tutorial - PerlMol Quick Tutorial
http://www.perlmol.org/pod/Chemistry/Tutorial.html
Chemistry: Tutorial - PerlMol Quick Tutorial. The modules in the PerlMol toolkit are designed to simplify the handling of molecules from Perl programs in a general and extensible way. These modules are object-oriented; however, this tries to assume little or no knowledge of object-oriented programming in Perl. For a general introduction about how to use object-oriented modules, see HTML: Tree: AboutObjects. How to read a molecule from a file. The following code will read a PDB file:. Object. An object.
PerlMol - Mailing Lists
http://www.perlmol.org/lists.html
PerlMol - Mailing Lists. Since the project is just starting and there's not a lot of traffic, there is only one mailing list:. If the traffic increases, the list may be split into a developers list, a users lists, and maybe an anouncements list.
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Software Contributions - Daniel James Scott
http://danieljamesscott.org/software-contributions.html
Software development, DevOps. Perl module for converting a database from Oracle to PostgreSQL. Various fixes for edge cases and specific schema details. Perl module for storing and manipulating objects representing chemical molecules. Contributed a patch to allow ionic compounds with non-integer atomic ratios. Nagios plugin for monitoring AFS servers. Patched for compatibility with Fedora/RedHat servers. Disabling a mod security rule for a specific http argument. ITerm2 settings to emulate linux terminals.
Efficient Bits: September 2013
http://efficientbits.blogspot.com/2013_09_01_archive.html
Thursday, 19 September 2013. SMILES Implicit Valence of Aromatic Atoms. The last couple of months I've been reworking the Chemistry Development Kit (CDK). Handling of Simplified molecular-input line-entry system (SMILES). In this process there has been a couple of discoveries which may be interesting to share. Something previously not provided by the CDK was correct handling of implicit valence. Both the Daylight Theory Manual. We can omit hydrogens counts and just write ' C=CC. One could speculate we ha...
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Per E Lindgren 1999. Innehållet är skyddat enligt upphovsrättslagen. Text och bilder får inte användas utan tillstånd från upphovsmannen. Mer nyheter finns på PA-sidan. En tråkig nyhet. Kolla på. Det ska ni alltid göra. Byggsatser som kommer att tas bort ur sortimentet kommer att listas under en sådan rubrik så länge de finns kvar till försäljning. Kolla därför i första hand vilka modeller det gäller under respektive typ av byggsats, dvs. lok / motorvagnar, personvagnar eller godsvagnar. Lasse Sjölunds f...
Perl Moderne
L'essentiel des pratiques actuelles. Par Damien Krotkine, Sébastien Aperghis-Tramoni, Jérôme Quelin, Philippe Bruhat. 450 pages, Editions Pearson, octobre 2010, ISBN 978-2-7440-2419-1. Acheter sur Amazon.fr. Acheter sur Fnac.com. Acheter sur Pearson.fr. Blog] Perl Moderne chez Pearson. Magazine] GNU/Linux Magazine France n 134. 201101), p. 54, Critique de "Perl moderne - le guide de survie". 201101), Nouveautés livres. Forum] Developpez.com - Perl moderne : L'essentiel des pratiques actuelles.
Perl Diver : Installed Modules
Perl Diver 2.31. Perl Config - Summary. Perl Config - Full. A list of Perl modules installed on this machine. Each module links to further information about the module. The following paths have been searched:. Date: Manip: TZ: eusofi00. Debian: Debhelper: Dh Lib. Date: Manip: TZ: eustoc00. Debian: Debhelper: Dh Version. Date: Manip: TZ: eutall00. Date: Manip: TZ: eutira00. Date: Manip: TZ: euuzhg00. Date: Manip: TZ: euvadu00. Date: Manip: TZ: euvien00. Date: Manip: TZ: euviln00. Date: Manip: TZ: euvolg00.
PerlMol - Perl Modules for Molecular Chemistry
PerlMol - Perl Modules for Molecular Chemistry. Updated distributions: Chemistry-Mol-0.37, Chemistry-Pattern-0.27, Chemistry-Ring-0.20, Chemistry-Canonicalize-0.11, Chemistry-Bond-Find-0.23 Chemistry-File-MDLMol-0.21, Chemistry-File-PDB-0.23, Chemistry-File-SMILES-0.46,. The current status could be called "alpha", because there are still many missing or untested features, but there is enough for being useful for some real work. The Feature list. The following CPAN distributions have been released:.
dead brains don't dance
I Blame the Patriarchy. Random Acts of Reality. Bloggerheads: The Alisher Usmanov Affair. A View from A Broad. Better than salt money. Im Sorry I Havent A Clue. This rly be Steve. Dead brains dont dance. Beyond the last visible dog. Jul 15th, 2013. Over a dozen 4x4 posts, then, wheelbarrowed from John's van to the yard and, so the yard didn't end up littered with unchopped wood once again, cut into woodburner-sized chunks. Logs while I had the tools out. Thankfully, all done before the weather got. A wor...
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Getting Teeth Braces - Braces for Healthy Smile
Braces for Healthy Smile. What CPAP Mask Is Best For Me? October 4, 2017. The most common treatment used for sleep apnea is the continuous positive airway pressure or CPAP therapy. Sleep apnea is brought about by a blockage in the airway which causes you to stop breathing when you are asleep. Your brain will then force you to wake up and breathe after which you will fall asleep. Which CPAP Mask Is Right For Me? Properties Of A Nasal Cushion. A nasal cushion is the smallest of all the masks and it consist...
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