pgcluster.lshtm.ac.uk

Pathogen genome cluster computing

Pathogen Genome Cluster Computing. Artistic impression of human tissue chronically infected with. Credit, Castro Sila, Memorias. The high performance computing at LSHTM was funded through the Science Research Infrastructure Fund (SRIF), which is a collaboration between the UK government and the Wellcome Trust. Plague and intestinal bacteria such as. Genomics has resulted in an analytical research front within bioinformatics. Converging on computer intensive mathematical models.

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Pathogen genome cluster computing | pgcluster.lshtm.ac.uk Reviews

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Pathogen Genome Cluster Computing. Artistic impression of human tissue chronically infected with. Credit, Castro Sila, Memorias. The high performance computing at LSHTM was funded through the Science Research Infrastructure Fund (SRIF), which is a collaboration between the UK government and the Wellcome Trust. Plague and intestinal bacteria such as. Genomics has resulted in an analytical research front within bioinformatics. Converging on computer intensive mathematical models.

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1 Genomics

2 genome

3 cluster

4 BioPerl

5 software pipelines

6 pipelines

7 clusters

8 cluster computing

9 supercomputing

10 pathogen

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clusters,genomes,pipelines,statistics,history,people,trypanosoma cruzi,pathogen genomics overview,plasmodium,entamoeba,tuberculosis,campylobacter,that is increasingly,cluster computing technical,software itinerary,trypanosomatid recombination,t brucei

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Pathogen genome cluster computing | pgcluster.lshtm.ac.uk Reviews

https://pgcluster.lshtm.ac.uk

Pathogen Genome Cluster Computing. Artistic impression of human tissue chronically infected with. Credit, Castro Sila, Memorias. The high performance computing at LSHTM was funded through the Science Research Infrastructure Fund (SRIF), which is a collaboration between the UK government and the Wellcome Trust. Plague and intestinal bacteria such as. Genomics has resulted in an analytical research front within bioinformatics. Converging on computer intensive mathematical models.

INTERNAL PAGES

pgcluster.lshtm.ac.uk

1

People involved in the cluster computer

http://pgcluster.lshtm.ac.uk/people.htm

Pathogen Genome Cluster Computing. 2005, photo by Anne Koerber, LSHTM. Hardware setup was done by Dorothy Wright ( dorothy.wright@lshtm.ac.uk. Head of ITD computing, and Phil Wheadon ( phill.wheadon@lshtm.ac.uk. Software setup was done by Michael Gaunt ( michael.gaunt@lshtm.ac.uk. Who is pictured together with a giant mosquito. Michael Gaunt is the current cluster administrator, web site author and has a strong research focus. On pathogen phylogenomics, particularly trypanosomatid recombination. London S...

2

Pathogen genomes

http://pgcluster.lshtm.ac.uk/genomes.htm

Pathogen Genome Cluster Computing. Synteny maps between the genomes of. With different colours representing blocks of synteny between the 11 chromosomes of. And 36 chromosomes of. Reproduced with permission from El-Sayed. Science 309: 406, Fig. 2 2005 AAAS. Permission from AAAS is required for all other uses. A genome is the complete complement of DNA for an organism. Complete genome sequences are available for many pathogenic bacteria including. And intestinal pathogens such as. Comparative genomic appr...

3

Pathogen genome cluster computing

http://pgcluster.lshtm.ac.uk/index.htm

Pathogen Genome Cluster Computing. Artistic impression of human tissue chronically infected with. Credit, Castro Sila, Memorias. The high performance computing at LSHTM was funded through the Science Research Infrastructure Fund (SRIF), which is a collaboration between the UK government and the Wellcome Trust. Plague and intestinal bacteria such as. Genomics has resulted in an analytical research front within bioinformatics. Converging on computer intensive mathematical models.

4

History of cluster computer at London School of Hygience

http://pgcluster.lshtm.ac.uk/history.htm

Pathogen Genome Cluster Computing. This section could be expanded and assigned a separate web page in due course. Load activity of each slave-node is no longer automatically displayed following a recent Ganglia upgrade. Click on total cluster load diagram pictured above to activate load activity of each slave node. Things I just never got round to doing. MPI needs activating - normally I write my own parallel processing routines, but several users now need this capability for freeware packages. Two sourc...

5

Software pipelines

http://pgcluster.lshtm.ac.uk/pipelines.htm

Pathogen Genome Cluster Computing. Flooded parallel pipelines form queues. People have become the tools of their tools. An example of a Perl, BioPerl and UNIX pipeline for trypanosomatid genomics. Database image, artists impression of. Infected human tissue. Credit, Castro Sila, Memorias. A script refers to a core analytical or processing program written in Perl which is not glue, i.e. does more than simply shunt files around. Numerous functions were obtained from BioPerl. Last updated 28th July, 2005 MWG.

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Pathogen genome cluster computing

Pathogen Genome Cluster Computing. Artistic impression of human tissue chronically infected with. Credit, Castro Sila, Memorias. The high performance computing at LSHTM was funded through the Science Research Infrastructure Fund (SRIF), which is a collaboration between the UK government and the Wellcome Trust. Plague and intestinal bacteria such as. Genomics has resulted in an analytical research front within bioinformatics. Converging on computer intensive mathematical models.

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