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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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bbmri | phenoflow.com Reviews

https://phenoflow.com

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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phenoflow.com

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bbmri

http://www.phenoflow.com/wiki

Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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SequencingIntersection – bbmri

http://www.phenoflow.com/wiki/SequencingIntersection

Status: Beta Authors: Patrick Deelen, Morris Swertz. Tool that can create an intersection of variants that are shared by multiple samples. This tool is used to assess if there are variants that are shared among family members. CNS / Q20 (from BGI). Per group/family a file with the shared variants. Excel file with the variants that are shared with in groups/families and how often a variant is shared. Add support to also create intersection based on indel data. Last modified on Feb 4, 2011 3:58:42 PM.

3

Imputations – bbmri

http://www.phenoflow.com/wiki/Imputations

Working group on Imputation. We have started a working group on imputations to develop a best practice based pipeline that will perform well on the compute resources we will be using. For now the documents are only visible to project members. If you want to get access contact David or Morris. Paul de Bakker (PI). Last modified on Jul 5, 2012 10:35:40 PM. Download in other formats:. Powered by Trac 1.0.7. Visit the Trac open source project at. Http:/ trac.edgewall.org/.

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Timeline – bbmri

http://www.phenoflow.com/timeline

Larr; Previous Period. Next Period →. For information about the timeline view. Download in other formats:. Powered by Trac 1.0.7. Visit the Trac open source project at. Http:/ trac.edgewall.org/.

5

GwasQcPipeline – bbmri

http://www.phenoflow.com/wiki/GwasQcPipeline

Removed all bad samples (taken from Mathieu). P-link - bfile GvNL 250111 - remove GvNL bad samples.txt - make-bed - out GvNL good samples. P-link - bfile GvNL samples - update-ids GvNL family update.txt - make-bed - out GvNL good fam. P-link - bfile GvNL good fam - update-parents GvNL parents update.txt - make-bed - out GvNL good fam par. Manual check for suspicious individuals (not in trios) and remove them. Check and update sex information. P-link - bfile GvNL good fam par susp - check-sex - make-bed.

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Functional Genomics project joined the wiki. E-BioGrid project for biobanking started. We have proudly joined the. Project on a mission to bring nation-wide IT infrastructure for large scale biobanking. First goal is building a model infrastructure for the Dutch Biobank community, BBMRI-NL, that manage . Quality scores histogram from the BGI. Maybe other graphs/data provided by the BGI. Quality scores with the FastqC toolkit. Quality scores per base. Quality scores per . To gain access to restricted area...

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