phylogenetictrees.com
Phylogenetic TreeHomepage of John Archer. Welcome to my website. Please use the menu to access various pages.
http://www.phylogenetictrees.com/
Homepage of John Archer. Welcome to my website. Please use the menu to access various pages.
http://www.phylogenetictrees.com/
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Phylogenetic Tree | phylogenetictrees.com Reviews
https://phylogenetictrees.com
Homepage of John Archer. Welcome to my website. Please use the menu to access various pages.
phylogenetictrees.com
Phylogenetic Tree
http://www.phylogenetictrees.com/publications.php
Whiteley G, Casewell NR, Harrison RA, Wagstaff SC. (2014). VTBuilder: a tool for the assembly of multi isoform transcriptomes. Dec 3;15(1):389. [Epub ahead of print] PMID: 25465054. Gibson RM, Meyer AM, Winner D, Archer J. Feyertag F, Ruiz-Mateos E, Leal M, Robertson DL, Schmotzer CL, Quiñones-Mateu ME. (2014). Jan;58(4):2167-85. doi: 10.1128/AAC.02710-13. Epub 2014 Jan 27. PMID: 24468782. Kim EY, Lorenzo-Redondo R, Little SJ, Chung YS, Phalora PK, Maljkovic Berry I, Archer J. May;51(5):1517-27. doi:...
Phylogenetic Tree
http://www.phylogenetictrees.com/segminator.php
Segminator - A tool for the analysis of viral data generated using the 454 Life Sciences sequencing platform. Segminator is a tool for extracting data from reads generated using the 454 Life Science sequencing platform [1]. A number of options are available to the user through the interface including:. Obtaining nucleotide and amino acid residue frequencies at sites across the template. Removal of reads based on hamming distance cutoff thresholds. Identification of variants within viral populations.
Phylogenetic Tree
http://www.phylogenetictrees.com/ctree.php
CTree - analysis of clusters on phylogenetic trees. CTree has been designed by John Archer. For viewing, analyzing and editing phylogenetic trees. There is a particular emphasis on the analysis of clusters within such trees. Clusters are stored as individual data structures from which statistical data can be easily extracted. Click on the thumbnails to enlarge.). Some of the more novel features include:. Automatically defining clusters on the tree using a heuristic cluster finding algorithm. Low intra-cl...
Phylogenetic Tree
http://www.phylogenetictrees.com/presentations.php
VTBUILDER: A TOOL FOR THE ASSEMBLY OF VARIABLE TRANSCRIPTOMES. International Environmental 'Omics Synthesis Conference (iEOS), Liverpool, UK. Poster presentation. (2014). Slaying the Chimera in Venom Gland Transcriptomics. Venoms, Oxford, UK. Oral presentation. (2013). DISTINGUISHING LOW-FREQUENCY GENETIC VARIATION FROM SEQUENCING ERROR IN TEMPORALLY SAMPLED ULTRA-DEEP VIRAL DATASETS. 19th International Workshop on HIV Dynamics and Evolution, Asheville, US. Poster presentation. (2012). Sixteenth Conferen...
Phylogenetic Tree
http://www.phylogenetictrees.com/coverage.php
The characterization of HIV-1 k-mer space - a prerequisite to algorithmic vaccine design. Download the jar file here. In Archer et al. Sample data - aligned amino acid residues in fasta format (P17 region of HIV-1 - subtype B). Generated constructs (top) and associated fragment frequencies (bottom). Cover provided by randomly sampled sequences. Per site residue frequencies. Download the jar file here. The jar should be launched via the command line using java -jar -Xmx1000M CoverageTool v0.1.jar. A sampl...
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Phylogenetic Tree
Homepage of John Archer. Welcome to my website. Please use the menu to access various pages.
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