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PLAAC: finding sequences with Prion-Like Amino Acid Composition

PLAAC: Prion-Like Amino Acid Composition. Searches protein sequences to identify probable prion subsequences using a hidden-Markov model (HMM) algorithm. documentation and how to cite. Paste or Upload Protein Sequence*. Note that all sequences must contain only valid amino acid identifiers. Uploaded files need to be in FASTA format. Uploaded files override pasted sequences. Relative weighting of background probabilities (. Background frequencies from S. cerevisae. Oliver D. King, UMass Medical School.

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PLAAC: finding sequences with Prion-Like Amino Acid Composition | plaac.wi.mit.edu Reviews

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PLAAC: Prion-Like Amino Acid Composition. Searches protein sequences to identify probable prion subsequences using a hidden-Markov model (HMM) algorithm. documentation and how to cite. Paste or Upload Protein Sequence*. Note that all sequences must contain only valid amino acid identifiers. Uploaded files need to be in FASTA format. Uploaded files override pasted sequences. Relative weighting of background probabilities (. Background frequencies from S. cerevisae. Oliver D. King, UMass Medical School.

<META> KEYWORDS

1 plaac

2 clear

3 options

4 core length

5 alpha;

6 select one

7 from input sequence

8 bos taurus

9 homo sapiens

10 saccharomyces cerevisiae

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plaac,clear,options,core length,alpha;,select one,from input sequence,bos taurus,homo sapiens,saccharomyces cerevisiae,canis familiaris,arabidopsis thaliana,sus scrofa,rattus norvegicus,drosophila melanogaster,gallus gallus,danio rerio,mus musculus,yeast

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PLAAC: finding sequences with Prion-Like Amino Acid Composition | plaac.wi.mit.edu Reviews

https://plaac.wi.mit.edu

PLAAC: Prion-Like Amino Acid Composition. Searches protein sequences to identify probable prion subsequences using a hidden-Markov model (HMM) algorithm. documentation and how to cite. Paste or Upload Protein Sequence*. Note that all sequences must contain only valid amino acid identifiers. Uploaded files need to be in FASTA format. Uploaded files override pasted sequences. Relative weighting of background probabilities (. Background frequencies from S. cerevisae. Oliver D. King, UMass Medical School.

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PLAAC: finding sequences with Prion-Like Amino Acid Composition

http://plaac.wi.mit.edu/details

PLAAC: Prion-Like Amino Acid Composition. How to cite PLAAC. If you use this this website, or the underlying code, in any publication, please cite our. Paper Lancaster et al. (2014). Which also describes additional extensions and implementation details of the algorithm. Code for the algorithm, as well as for powering this website is available at GitHub. Under the open-source MIT license. How to use web-based PLAAC. The background amino-acid (AA) frequencies (see below). And the species being scored.

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GitHub - whitehead/plaac: Prion-Like Amino Acid Composition

https://github.com/whitehead/plaac

Prion-Like Amino Acid Composition. Use Git or checkout with SVN using the web URL. Jul 21, 2016. Failed to load latest commit information. Fixes problem with command line flags -d and -s. Feb 12, 2016. Required dirs for deploy plus update eventmachine. Apr 28, 2016. Required dirs for deploy plus update eventmachine. Apr 28, 2016. Jul 21, 2016. Oct 13, 2015. Transition to a public repository. May 14, 2014. Switch png rendering to cairo. Removes Xserver requirement. Jan 28, 2016. 137, 146 58. Lancaster, A&...

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Projects and Software – Biosystems Analytics

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The team behind Biosystems Analytics has consulted with many scientists and businesses helping them conceive and prototype complex systems models. Ranging from development genetics, ecological fish dynamics, bacterial colonies to supply chains and stockmarkets. To this end, we use a multifacted approach to modeling including agent-based. Strategies, as well as hybrid approaches combining all of the above. Projects we have consulted on, prototyped, or fully implemented include:. Dr Lancaster was one of it...

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PLAAC: finding sequences with Prion-Like Amino Acid Composition

PLAAC: Prion-Like Amino Acid Composition. Searches protein sequences to identify probable prion subsequences using a hidden-Markov model (HMM) algorithm. documentation and how to cite. Paste or Upload Protein Sequence*. Note that all sequences must contain only valid amino acid identifiers. Uploaded files need to be in FASTA format. Uploaded files override pasted sequences. Relative weighting of background probabilities (. Background frequencies from S. cerevisae. Oliver D. King, UMass Medical School.

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