plant-image-analysis.org
Plant Image Analysis | SoftwareWebsite presenting the available plant image analysis softwares
http://www.plant-image-analysis.org/
Website presenting the available plant image analysis softwares
http://www.plant-image-analysis.org/
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Guillaume Lobet
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Plant Image Analysis | Software | plant-image-analysis.org Reviews
https://plant-image-analysis.org
Website presenting the available plant image analysis softwares
plant-image-analysis.org
Plant Image Analysis - Black Spot
http://www.plant-image-analysis.org/software/blackspot
National Center for Biological Sciences. Black Spot: a platform for automated and rapid estimation of leaf area from scanned images. Varma V. and Osuri A M. 2013, Plant Ecol, 1-5. Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using any standard flatbed scanner. This easy to use software allows the user to batch process a large number of samples across multiple species with minimal user input. Source: Black Spot website. Submit your own rating.
Plant Image Analysis - CellProfiler
http://www.plant-image-analysis.org/software/cellprofiler
CellProfiler: image analysis software for identifying and quantifying cell phenotypes. AE Carpenter, TR. Jones, MR. Lamprecht, C. Clarke, IH. Kang, O. Friman, DA. Guertin, JH. Chang, RA. Lindquist, J. Moffat, P. Golland, DM. Sabatini,. 2006 , Genome Biol. , 7(10), 0. CellProfiler was designed and optimized for the most common high-content screening image format, that is, two-dimensional images. Source: Carpenter et al. (2006) Genome biology , 7(10). Blog comments powered by Disqus. Submit your own rating.
Plant Image Analysis - Cell-o-Tape
http://www.plant-image-analysis.org/software/cellotape
Center for Plant Integrative Biology @ University of Nottingham. Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape. AP French, MH. Wilson, K. Kenobi, D. Dietrich, U. Voß, S. Ubeda-Tomás, TP. Pridmore, DM. Wells,. 2012 , Plant Methods , 8(0), 7. Source: Cell-o-Tape website (CPIB). Blog comments powered by Disqus. Submit your own rating. Windows, mac, linux,. Open-source, freeware,. Any, longitudinal section,. Other tools for the analysis of single-root.
Plant Image Analysis - CellSeT
http://www.plant-image-analysis.org/software/cellset
Center for Plant Integrative Biology @ University of Nottingham. CellSeT: novel software to extract and analyze structured networks of plant cells from confocal images. MP Pound, AP. French, DM. Wells, MJ. Bennett, TP. Pridmore,. 2012 , Plant Cell , 24(4), 1353. Source: CellSet website (CPIB). Blog comments powered by Disqus. Submit your own rating. Any, arabidopsis,. Longitudinal confocal image,. Other tools for the analysis of single-root. Created and maintained by Guillaume Lobet.
Plant Image Analysis - Bisque
http://www.plant-image-analysis.org/software/bisque
Center for Bio-Image Informatics @ University of California Santa Barbara. Bisque: a platform for bioimage analysis and management. K Kvilekval, D. Fedorov, B. Obara, A. Singh, BS. Manjunath,. 2010 , Bioinformatics , 26(4), 544. Blog comments powered by Disqus. Submit your own rating. Windows, mac, linux,. Length, color, shape, surface,. Automated, semi-automated, manual,. Other tools for the analysis of general. Created and maintained by Guillaume Lobet. Powered and inspired by Kirby.
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plantphenomicsaustralia.org.au
Plant Phenomics Australia | Phenomics Links: Tools and Suppliers
http://www.plantphenomicsaustralia.org.au/suppliers
C/- The University of Adelaide. Adelaide SA 5005 Australia. Telephone: 61 8 8313 1134. Facsimile: 61 8 8313 0828. Phenomics Links: Tools and Suppliers. Numerous new suppliers have emerged in recent years that offer tools for plant phenotyping and crop sensing. The following lists a number of suppliers and useful links for your information. Please contact us. If you would like to add suppliers or useful sites to our list that are not currently included. High throughput controlled e. SPAD ( Konica Minolta.
Links | Grossmann Lab
http://neu.grossmann-lab.de/links
Cell Biology @ Universität Heidelberg. 8211; The Arabidopsis Information Resource. A database of genetic and molecular biology data for the model higher plant. 8211; Plant membrane protein database. 8211; Introduction to microscopy and microscopes including history, images and interactives. 8211; A collection of tools used for plant image analysis. 8211; A nice comprehensive overview of the available fluorescent proteins.
Cleared Leaf Image Database
http://www.clearedleavesdb.org/tools
Skip to main content. Cleared Leaf Image Database. How to be a curator? The following lists software tools that may be of use to researchers interested in analyzing the structure of cleared leaf images. If you know of additional software tools, please email our team. So we can add them to this list. Bylesjo, M. et al. LAMINA: a tool for rapid quantification of leaf size and shape parameters. BMC Plant Biology 8: 82 (2008). Rasband WS: ImageJ, US National Institutes of Health, Bethesda MD USA 1997-2011.
Links of Interest | McCouch RiceLab
http://ricelab.plbr.cornell.edu/links
Skip to main content. Susan R. McCouch Rice Genetics Lab. Department of Plant Breeding and Genetics, Cornell University. Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation. Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice. Genome-Wide Association Study for Traits Related to Plant and Grain Morphology, and Root Architecture in Temperate Rice Accessions. Rice Production Course at IRRI.
Techniques
http://www.iuap-mars.be/techniques
This page present different techniques available and shared within the laboratories of the network. Articles are listed and displayed here bellow, the left menu can also be used to navigate between group of techniques. Involved in order to get more information about a specific technique. Aeroponic and Hydroponic culture. High throughput root phenotyping platform based on aeroponic culture of maize plants. Small scale aeroponic system for non-destructive maize root and shoot imaging. High throughput root ...
Neither research nor science
http://www.guillaumelobet.be/blog
Neither Research, Nor Science. A bit of everything, mainly roots, image analysis and open science. Publish more of publish better? 11 May 2016, by Guillaume Lobet. A couple of month ago, I was discussing with senior colleagues about the conditions to (have a chance to) be tenured in Belgium. One of them told that the first thing the evaluation committee will look at will be my h-index. He also told me that, below a h-index of 10, I have few chances to even be. 17 Dec 2015, by Guillaume Lobet. Nobody ques...
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Plant Image Analysis | Software
163 tools 22 datasets. If for any reason you would like to cite this website (we would be very pleased), please use one of the following citation:. Image analysis in plant sciences: Publish then Perish. 2017, Trends in Plant Science. An online database for plant image analysis software tools. Lobet G., Draye X., Périlleux C. 2013, Plant Methods, vol. 9 (38). Leaf Angle Distribution Toolbox.
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