plantreactome.oicr.on.ca

Plant Reactome Pathway Database | Reactome for plants!

Linking to Plant Reactome. Plant Reactome is a freely accessible database of plant metabolic and regulatory pathways. Our goal is to provide plant researchers tools for visualization, interpretation and analysis of pathway knowledge to support basic research, genome analysis, modeling, systems biology and education. The development of Plant Reactome is supported the US National Science Foundation award ( #1127112. The database is powered by the resources developed for the human Reactome project.

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Plant Reactome Pathway Database | Reactome for plants! | plantreactome.oicr.on.ca Reviews

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Linking to Plant Reactome. Plant Reactome is a freely accessible database of plant metabolic and regulatory pathways. Our goal is to provide plant researchers tools for visualization, interpretation and analysis of pathway knowledge to support basic research, genome analysis, modeling, systems biology and education. The development of Plant Reactome is supported the US National Science Foundation award ( #1127112. The database is powered by the resources developed for the human Reactome project.

<META> KEYWORDS

1 about plant reactome

2 news

3 plant reactome team

4 scientific advisory board

5 other reactomes

6 license agreement

7 plant reactome disclaimer

8 content

9 table of contents

10 data schema

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Plant Reactome Pathway Database | Reactome for plants! | plantreactome.oicr.on.ca Reviews

https://plantreactome.oicr.on.ca

Linking to Plant Reactome. Plant Reactome is a freely accessible database of plant metabolic and regulatory pathways. Our goal is to provide plant researchers tools for visualization, interpretation and analysis of pathway knowledge to support basic research, genome analysis, modeling, systems biology and education. The development of Plant Reactome is supported the US National Science Foundation award ( #1127112. The database is powered by the resources developed for the human Reactome project.

INTERNAL PAGES

plantreactome.oicr.on.ca

1

Stats

http://plantreactome.oicr.on.ca/stats.html

Reactome Statistics (Version 58). Reactome annotates to protein isoforms when this information is available. The total number of curated human proteins including isoforms is 10365.

2

Plant Reactome Download

http://plantreactome.oicr.on.ca/download

Linking to Plant Reactome. MySQL, aligned with Gramene Rel.50) - contains rice pathways and projections to 62 other plant species. Gene products listed by pathway and species. Contains curated and projected gene product identifiers grouped by pathway and species (tab-delimited). Projected gene products listed by pathway and reaction. Indexed to curated Oryza sativa gene products (tab-delimited). Linking to Plant Reactome.

3

Reactome | Pathway Browser

http://plantreactome.oicr.on.ca/PathwayBrowser

Please wait while loading the pathway browser.

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wiki.reactome.org

Reactomes - ReactomeWiki

http://wiki.reactome.org/index.php/Reactomes

Our reason for being is the official Reactome Project, that site can be found here. We have a standard operating procedure. For our releases, which is specific to human data and our particular computer set up, but which might be useful to you. Software documentation - APIs, installations howtos, FAQs, etc. The following Reactomes are known to us. Clicking on any one of these will take you to an editable page giving you a detailed description. Pathways for the chicken. Setting up Your Own Reactome. It is ...

archive.gramene.org

Gramene: Plant Biochemical Pathway Database and Home to RiceCyc, MaizeCyc, BrachyCyc and SorghumCyc.

http://archive.gramene.org/pathway

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

archive.gramene.org

Gramene: Genetic Diversity Database

http://archive.gramene.org/db/diversity/diversity_view

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

archive.gramene.org

Gramene Marker Home Page

http://archive.gramene.org/markers

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

archive.gramene.org

Gramene Gene Home Page

http://archive.gramene.org/rice_mutant

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

archive.gramene.org

Gramene Maps Home Page

http://archive.gramene.org/cmap

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

archive.gramene.org

Gramene Germplasms

http://archive.gramene.org/db/germplasm

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

archive.gramene.org

Gramene QTL Database

http://archive.gramene.org/qtl

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

archive.gramene.org

Gramene Literature Home Page

http://archive.gramene.org/literature

Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).

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Plant Reactome Pathway Database | Reactome for plants!

Linking to Plant Reactome. Plant Reactome is a freely accessible database of plant metabolic and regulatory pathways. Our goal is to provide plant researchers tools for visualization, interpretation and analysis of pathway knowledge to support basic research, genome analysis, modeling, systems biology and education. The development of Plant Reactome is supported the US National Science Foundation award ( #1127112. The database is powered by the resources developed for the human Reactome project.

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