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http://portal.sbgrid.org/
Grid computing for biological structure analytics
http://portal.sbgrid.org/
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Grid computing for biological structure analytics
portal.sbgrid.org
SBGrid Science Portal
https://portal.sbgrid.org/d/apps/wsmr
Portal Application User Guide. When WSMR is suitable. You've got good data (. You've tried MR with lots of good candidate a priori knowledge. Sequence similarity (PSI-BLAST search). No a priori knowledge of expected fold. You haven't found any good models to use for phasing. Time to try a brute-force search: WSMR. When MR is not suitable. Complexes containing significant DNA or RNA. At least right now these will probably not work. You haven't tried MR and just want a "quick fix". What you will get. Check...
SBGrid Resources
https://portal.sbgrid.org/d/resources
The SBGrid Science Portal has attempted to make available a variety and depth of resources. Key resources can be accessed under the Resources drop down menu or from the link, they are highlighted below:. Include RCSB, SCOP and other protein domain databases made available for browsing. They may be useful in structure look-up or in comparing new data to known structures. On the available applications provides user guide as well as background and theoretical understanding.
SBGrid Applications
https://portal.sbgrid.org/d/apps
The SBGrid Science Portal was created to provide web access to several applications useful in determining protein structure. The applications currently available are:. Wide Search Molecular Replacement (WSMR). Is available at the time of registration or can be viewed by clicking on the link. Mdash; Also visit the SBGrid Consortium.
SBGrid Science Portal
https://portal.sbgrid.org/devel
The sbgrid Science Portal offers a number of resources for developers. These include access to:.
SBGrid Science Portal
https://portal.sbgrid.org/docs
2002 07 bk vim.pdf. 2006 01 txt NIST EngineeringStatisticsHandbook 3111p.pdf. Application specific documentation can be found under applications: WSMR. Links to documentation related to Open Science grid and other external resources are below.
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SBGrid Home
Wide Search Molecular Replacement. WSMR searches up to 100,000 domains for molecular replacement models given X-ray structure factors. DEN produces high resolution structures from low resolution X-Ray data by only refining known restraints and the use of homology models. SBGrid provides a distribution of over 200 scientific software packages with monthly updates to member labs. Visit the Consortium website. Of software distribution and scientific computing technical support. Assistance commissioning grid...
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