Basics of structural bioinformatics: Introduction to Protein structures, amino acid sequence alignment and homology modeling
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Structural Bioinformatics Guide: Protein Structure, Protein Sequence Analysis and Alignment, Homology Modeling | proteinstructures.com Reviews
https://proteinstructures.com
Basics of structural bioinformatics: Introduction to Protein structures, amino acid sequence alignment and homology modeling
proteinstructures.com
Protein Domains, Domain Assignment, domain identification, the CATH database
http://www.proteinstructures.com/Structure/Structure/protein-domains.html
Protein Domains and Domain Classification. 1- A spatially separated unit of the protein structure. 2- May have sequence and/or structural resemblance to another protein structure or domain. 3- May have a specific function associated with it. To characterize the folding of protein domains, we need to discuss the details of fold classification: How folds are defined by different databases, what are the relationships between a fold and the protein family, etc. To start, we need the following scheme:. We nee...
Torsion Angles and the Ramachnadran Plot in Protein Structures
http://www.proteinstructures.com/Structure/Structure/Ramachandran-plot.html
Torsion Angles and the Ramachandran Plot. Chain, also called. After the Indian physicist who first introduced the. Describe the rotations of the polypeptide backbone around the bonds between N-Cα (called Phi, φ) and Cα-C (called Psi, ψ). The Ramachandran plot provides an easy way to view the distribution of torsion angles of a protein structure (. RAMACHANDRAN GN, RAMAKRISHNAN C, SASISEKHARAN V., J Mol Biol., 7:95-99. Pal and Chakrabarti, 2002. Another exception from the principle of clustering around th...
Protein Databases, PDB and PDBsum
http://www.proteinstructures.com/Structure/Structure/proteinstructure-databases.html
Protein Databases: Short Overview. Where to find a protein structure I am interested in? Probably the first question, when working with a protein structure, would be where to find the structure of interest. And another question, which many people need to ask, once they get access to a protein structure file is: What is actually inside that file? What information can be found there apart from the structure as such? And by the way, what is that structure? How do we get it into a file? In Lund, Sweden,.
Amino Acid Sequence Alignment Tutorial Using the Expasy Server
http://www.proteinstructures.com/Sequence/Sequence/alignment-tutorial.html
Sequence alignment tutorial: Part I. Amino acid sequence alignment may be be rather simple to perform, but may also need some extra attention, for example in cases when the proteins have considerably diverged and there is a large number of insertions and deletions, or in cases of multidomain proteins, especially if not all domains are present in one of the proteins being compared, something which could happen for example during. Which is subunit BchI from. PDB) entries, if available, links to published w...
The 20 Amino Acids: hydrophobic, hydrophilic, polar and charged amino acids
http://www.proteinstructures.com/Structure/Structure/amino-acids.html
The 20 Amino Acids and Their Role in Protein Structures. The amino acids are put together into a polypeptide chain on the ribosome during protein synthesis. In this process the peptide bond, the covalent bond between two amino acid residues, is formed. There are. 20 different amino acids. Low propensity to be in contact with water),. These two residues are often highly conserved in protein families since they are essential for preserving a particular protein three-dimensional fold. Bull; Lysine - Lys - K.
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Main Page - Proteinstructure.net
This is an international protein structure annotation project page. We invite all of you to put your favourite proteins and explain them with the freedom and free styles. Retrieved from " http:/ Proteinstructure.net/index.php/Main Page. Related Links [ Edit. This page was last modified on 8 November 2009, at 09:05. This page has been accessed 40,737 times. Content is available under.
Main Page - Proteinstructure.org
This site has been founded around 2008. It now looks abandoned, as it was heavily spammed when I saw it. Retrieved from " http:/ Proteinstructure.org/index.php/Main Page. Related Links [ Edit. This page was last modified on 11 November 2011, at 17:34. This page has been accessed 100,259 times. Content is available under.
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Protein Structure Blog
Structural Bioinformatics Guide: Protein Structure, Protein Sequence Analysis and Alignment, Homology Modeling
Basic Concepts in Structural Bioinformatics. This site provides a guide to protein structure and function, including various aspects of structural bioinformatics. It covers some basic. Principles of protein structure. Databases, relationships between protein amino acid sequence and the three-dimensional structure. In addition, some basics principles of. Structural biology and structure-based drug design outsourcing services. A wide range of. Services, protein crystallization and. If you like this site, p...
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