The Molecular Bioinformatics Center provides an integrated approach to the use of gene and protein sequence information, molecular structures, and related resources, in molecular biology.
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(PS)2 v.3: Protein Structure Prediction Server | ps2v3.life.nctu.edu.tw Reviews
https://ps2v3.life.nctu.edu.tw
The Molecular Bioinformatics Center provides an integrated approach to the use of gene and protein sequence information, molecular structures, and related resources, in molecular biology.
(PS)2v2: Protein Structure Prediction Server
http://ps2v2.life.nctu.edu.tw/display2.php?folder=example
National Chiao Tung University. V2: Protein Structure Prediction Server. Color key for model reliability (%). 1664, 0.389. Template = 2i46A, Q len = 181, S len = 152, Score = 220.9. Aligned = 87.85%, Identnties = 17.61%, SS identities = 66.67%. Query: 17 FLQPWIKALIEDNSEHDQYHPSGHVIPSLTKQDLALPHMSPTILTNPCHFAKITKFYNVCDYKVYASIRDSSHQILVEFS 96. L PWI LI SE G L A P H A T D D H. EcCccHHHHhhC-CCCCCccEEEEEEEEEeCCCCC- - - - CCCCCC-CCCC- - -CCCcEEEEEECCCCEEEEEEC. Chen CC, Hwang JK, Yang JM. (PS).
(PS)2v2: Protein Structure Prediction Server
http://ps2.life.nctu.edu.tw/display2.php?folder=example
National Chiao Tung University. V2: Protein Structure Prediction Server. Color key for model reliability (%). 1664, 0.389. Template = 2i46A, Q len = 181, S len = 152, Score = 220.9. Aligned = 87.85%, Identnties = 17.61%, SS identities = 66.67%. Query: 17 FLQPWIKALIEDNSEHDQYHPSGHVIPSLTKQDLALPHMSPTILTNPCHFAKITKFYNVCDYKVYASIRDSSHQILVEFS 96. L PWI LI SE G L A P H A T D D H. EcCccHHHHhhC-CCCCCccEEEEEEEEEeCCCCC- - - - CCCCCC-CCCC- - -CCCcEEEEEECCCCEEEEEEC. Chen CC, Hwang JK, Yang JM. (PS).
(PS)2v2: Protein Structure Prediction Server
http://ps2.life.nctu.edu.tw/docs.php
National Chiao Tung University. V2: Protein Structure Prediction Server. Is an automatic homology modeling server. The method uses a new substitution matrix, S2A2. That combines both sequence and secondary structure information for the detection of homologous proteins with remote similarity and the target-template alignment. The final three dimensional structure is built using the modeling package MODELLER. After generated a predicted model, the programs ProQ. And automatically sent to users. The S2A2 is...
(PS)2v2: Protein Structure Prediction Server
http://ps2v2.life.nctu.edu.tw/casp8.php
National Chiao Tung University. V2: Protein Structure Prediction Server. Comparison of the (PS). V2 server with 45 servers participating in the CASP8 competition for the template selection on 154 TBM targets. The best templates are directly summarized from the CASP8 website ( http:/ predictioncenter.org/casp8/. The performances of the different versions of (PS). Server for 154 TBM targets. Best templates in CASP8. Sum of GDT TS scores. Chen CC, Hwang JK, Yang JM. (PS). Protein structure prediction server.
(PS)2v2: Protein Structure Prediction Server
http://ps2v2.life.nctu.edu.tw/docs.php
National Chiao Tung University. V2: Protein Structure Prediction Server. Is an automatic homology modeling server. The method uses a new substitution matrix, S2A2. That combines both sequence and secondary structure information for the detection of homologous proteins with remote similarity and the target-template alignment. The final three dimensional structure is built using the modeling package MODELLER. After generated a predicted model, the programs ProQ. And automatically sent to users. The S2A2 is...
(PS)2v2: Protein Structure Prediction Server
http://ps2v2.life.nctu.edu.tw/index.php
National Chiao Tung University. V2: Protein Structure Prediction Server. Paste the query sequence (in FASTA format): *. Q03096 EST3 YEAST (Telomere replication protein EST3) MPKVILESHSKPTDSVFLQPWIKALIEDNSEHDQYHPSGHVIPSLTKQDLALPHMSPTILTNPCHFAKITKFYNVCDYKVYASIRDSSHQILVEFSQECVSNFERTHNCRITSETTNCLMIIGDADLVYVTNSRAMSHFKICLSNISSKEIVPVLNVNQATIFDIDQVGSLSTFPFVYKYL. Manual (users can select the modeling template by themself) or. Where xxxx is the PDB. Code and y is the chain). Chen CC, Hwang JK, Yang JM. (PS).
Online Analysis Tools - Protein Tertiary Structure
http://www.molbiol-tools.ca/Protein_tertiary_structure.htm
Sites are offered for calculating and displaying the 3-D structure of oligosaccharides and proteins. With the two protein analysis sites the query protein is compared with existing protein structures as revealed through homology analysis. Principles of Protein Structure, Comparative Protein Modelling and Visualization by N. Guex and M.C. Peitsch (GlaxoWellcome, Switzerland) is. To obtain PDB coordinates for a protein of your interest, go to the. Or Molecules to Go. An automated comparative protein modell...
(PS)2v2: Protein Structure Prediction Server
http://ps2.life.nctu.edu.tw/casp8.php
National Chiao Tung University. V2: Protein Structure Prediction Server. Comparison of the (PS). V2 server with 45 servers participating in the CASP8 competition for the template selection on 154 TBM targets. The best templates are directly summarized from the CASP8 website ( http:/ predictioncenter.org/casp8/. The performances of the different versions of (PS). Server for 154 TBM targets. Best templates in CASP8. Sum of GDT TS scores. Chen CC, Hwang JK, Yang JM. (PS). Protein structure prediction server.
(PS)2v2: Protein Structure Prediction Server
http://ps2.life.nctu.edu.tw/index.php
National Chiao Tung University. V2: Protein Structure Prediction Server. Paste the query sequence (in FASTA format): *. Q03096 EST3 YEAST (Telomere replication protein EST3) MPKVILESHSKPTDSVFLQPWIKALIEDNSEHDQYHPSGHVIPSLTKQDLALPHMSPTILTNPCHFAKITKFYNVCDYKVYASIRDSSHQILVEFSQECVSNFERTHNCRITSETTNCLMIIGDADLVYVTNSRAMSHFKICLSNISSKEIVPVLNVNQATIFDIDQVGSLSTFPFVYKYL. Manual (users can select the modeling template by themself) or. Where xxxx is the PDB. Code and y is the chain). Chen CC, Hwang JK, Yang JM. (PS).
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(PS)2v2: Protein Structure Prediction Server
National Chiao Tung University. V2: Protein Structure Prediction Server. Paste the query sequence (in FASTA format): *. Q03096 EST3 YEAST (Telomere replication protein EST3) MPKVILESHSKPTDSVFLQPWIKALIEDNSEHDQYHPSGHVIPSLTKQDLALPHMSPTILTNPCHFAKITKFYNVCDYKVYASIRDSSHQILVEFSQECVSNFERTHNCRITSETTNCLMIIGDADLVYVTNSRAMSHFKICLSNISSKEIVPVLNVNQATIFDIDQVGSLSTFPFVYKYL. Manual (users can select the modeling template by themself) or. Where xxxx is the PDB. Code and y is the chain). Chen CC, Hwang JK, Yang JM. (PS).
(PS)2 v.3: Protein Structure Prediction Server
Protein Structure Prediction Server Version 3.0. Sample output I (monomer). Sample output II (complex). Paste the query sequence (in FASTA format): *. Or upload from file:. Use the specific template (PDB ID:. Upload your own PDB file:. Huang TT, Hwang JK, Chen CH, Chu CS, Lee CW, Chen CC. (PS). Protein structure prediction server version 3.0. Last updated Apr 7, 2015 (56547 complex templates).
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