Welcome to Pseudogene.org! This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase. The website is developed and maintained by Yale Gerstein Group.
http://www.pseudogene.org/
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Pseudogene.org | pseudogene.org Reviews
https://pseudogene.org
Welcome to Pseudogene.org! This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase. The website is developed and maintained by Yale Gerstein Group.
Table Element Display
Chicken Pseudogenes (Build 55). Chicken Pseudogenes (Build 57). Chimp Pseudogenes (Build 50). Dog Pseudogenes (Build 50). Fly Pseudogenes (Build 50). Gencode Pseudogenes Release 3. Human Pseudogenes (Build 53). Human Pseudogenes (Build 55). Human Pseudogenes (Build 56). Human Pseudogenes (Build 57). Human Pseudogenes (Build 58). Human Pseudogenes (Build 59). Human Pseudogenes (Build 60). Human Pseudogenes (Build 61). Human Pseudogenes (Build 62). Human Pseudogenes (Build 63). Human Pseudogenes (Build 64).
PseudoFam - The Families of Pseudogenes
To see the overview of the Pseudofam database, click here. To explore the Pseudofam database, click here. To download the Pseudofam data sets, click here. Pseudofam is a database of pseudogenes assigned to different protein families which currently represents a compilation of pseudogenes, as well as their families, identified from 10 eukaryotic genomes. More. Lam HY, Khurana E, Fang G, Cayting P, Carriero N, Cheung KH, Gerstein MB. Pseudofam: the pseudogene families database. Last updated:Jul 11, 2010.
pseudogene.org
Pseudogene.org
http://www.pseudogene.org/Mouse
The current manual mouse annotation is in GENCODE. The GENCODE annotation of pseudogenes contains models that have been created by the Human and Vertebrate Analysis and Annotation (HAVANA) team, an expert manual annotation team at the Wellcome Trust Sanger Institute. This is informed by, and checked against, computational pseudogene predictions by the PseudoPipe. The current PseudoPipe results are on Ensembl genome release 83.
Pseudogene.org
http://www.pseudogene.org/DOWNLOADS
This website maintains all the data and tools associated with previous pseudogene publications from Gerstein lab. Publications are organized by species. Please click. To see the reference, or. To see the supporting data or tools. A complete list of pseudogene publications is also available here. Sisu et al. Comparative analysis of pseudogenes across three phyla. PNAS 111(37):13361-6, 2014. Pei et al., The GENCODE pseudogene resource. Genome Biol 13:R51, 2012. BMC Genomics 10:480, 2009. Zheng et al., ...
Pseudogene.org
http://www.pseudogene.org/pseudopipe
PseudoPipe is a homology-based computational pipeline that searches a mammalian genome and identifies pseudogene sequences. Pipeline Predictions on human genome. And other Eukaryotic genomes. Pipeline Predictions in plants:. In order to run PseudoPipe on the available plant genomes from Ensembl Plants. Please use the updated fetch file. To download the input data and then follow the instructions for the pipeline installation and execution. Example Arabidopsis-thaliana pseudogenes.
Pseudogene.org
http://www.pseudogene.org/Human
The current human manual annotation is available from GENCODE. The GENCODE annotation of pseudogenes contains models that have been created by the Human and Vertebrate Analysis and Annotation (HAVANA) team, an expert manual annotation team at the Wellcome Trust Sanger Institute. This is informed by, and checked against, computational pseudogene predictions by the PseudoPipe. The current PseudoPipe results are on Ensembl genome release 83. Other Human Pseudogene Sets.
psiCube
http://www.pseudogene.org/psicube
Welcome to psiCube, the site for comparative analysis of pseudogene annotation, activity and evolution across human, worm and fly. Sisu et al. Comparative analysis of pseudogenes across three phyla. PNAS, 111(37):13361-6, 2014. A detailed description of the analysis on human pseudogenes from an earlier GENCODE version (version 7) can be seen in psiDr. Pseudogene annotation in human. At pseudogene loci of human, worm and fly. In multiple organisms including human, macaque, mouse, zebrafish, worm and fly.
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PseudoMap - Resource of exploring esiRNA-mediated mechanism of pseudogenes
http://pseudomap.mbc.nctu.edu.tw/php/tutorial.php
A resource of exploring esiRNA-mediated mechanism of pseudogenes. The tutorial of pseudoMap. Statistic data of pseudoMap. Download of gene information, sequence and expression profiles. Send E-mail to us. Current state of pseudoMap. Link to related DBs. Browse of miRNA Regulator. Details of miRNA Regulator. Red-line represented TPG: link to all of TPG-derived esiRNAs. Blue-line represented esiRNA: link to single esiRNA. Link to TPG (click red-line). Gene Information: Transcriptions of TPG. Institute of B...
Pseudogene.org
http://www.pseudogenes.org/about.html
Pseudogenes are genomic DNA sequences similar to coding genes but without coding potential. They are regarded as defunct relatives of functional genes. What causes pseudogenes to arise? There are two accepted processes during which pseudogenes may arise:. Reverse transcription of an mRNA transcript with subsequent re-integration of the cDNA into the genome. Such copies of genes are termed processed. Pseudogenes. These pseudogenes can also accumulate random disablements over the course of evolution. Once ...
Pseudogene.org
http://www.pseudogenes.com/pseudopipe
PseudoPipe is a homology-based computational pipeline that searches a mammalian genome and identifies pseudogene sequences. Pipeline Predictions on human genome. And other Eukaryotic genomes. Pipeline Predictions in plants:. In order to run PseudoPipe on the available plant genomes from Ensembl Plants. Please use the updated fetch file. To download the input data and then follow the instructions for the pipeline installation and execution. Example Arabidopsis-thaliana pseudogenes.
Pseudogene.org
http://www.pseudogenes.com/Human
The current human manual annotation is available from GENCODE. The GENCODE annotation of pseudogenes contains models that have been created by the Human and Vertebrate Analysis and Annotation (HAVANA) team, an expert manual annotation team at the Wellcome Trust Sanger Institute. This is informed by, and checked against, computational pseudogene predictions by the PseudoPipe. The current PseudoPipe results are on Ensembl genome release 83. Other Human Pseudogene Sets.
Pseudogene.org
http://www.pseudogenes.com/about.html
Pseudogenes are genomic DNA sequences similar to coding genes but without coding potential. They are regarded as defunct relatives of functional genes. What causes pseudogenes to arise? There are two accepted processes during which pseudogenes may arise:. Reverse transcription of an mRNA transcript with subsequent re-integration of the cDNA into the genome. Such copies of genes are termed processed. Pseudogenes. These pseudogenes can also accumulate random disablements over the course of evolution. Once ...
Pseudogene.org
http://www.pseudogenes.com/Mouse
The current manual mouse annotation is in GENCODE. The GENCODE annotation of pseudogenes contains models that have been created by the Human and Vertebrate Analysis and Annotation (HAVANA) team, an expert manual annotation team at the Wellcome Trust Sanger Institute. This is informed by, and checked against, computational pseudogene predictions by the PseudoPipe. The current PseudoPipe results are on Ensembl genome release 83.
PseudoMap - Resource of exploring esiRNA-mediated mechanism of pseudogenes
http://pseudomap.mbc.nctu.edu.tw/php/statistics.php
A resource of exploring esiRNA-mediated mechanism of pseudogenes. Statistics of Pseudogene Class. GSM339994 reads: 13,869. GSM339995 reads: 11,883. GSM339996 reads: 1,786. HB reads: 5,026,203. HESE reads: 5,031,920. GSM531980 reads: 358,994. GSM531983 reads: 652,641. GSM531979 reads: 372,454. GSM531982 reads: 328,239. GSM531984 reads: 423,338. GSM531977 reads: 354,524. GSM531981 reads: 315,838. GSM531985 reads: 2,503,533. GSM531986 reads: 2,543,980. GSM531987 reads: 369,926. GSM531988 reads: 618,689.
PseudoMap - Resource of exploring esiRNA-mediated mechanism of pseudogenes
http://pseudomap.mbc.nctu.edu.tw/php/index.php
A resource of exploring esiRNA-mediated mechanism of pseudogenes. GSM339994 reads: 13,869. GSM339995 reads: 11,883. GSM339996 reads: 1,786. HB reads: 5,026,203. HESE reads: 5,031,920. GSM531980 reads: 358,994. GSM531983 reads: 652,641. GSM531979 reads: 372,454. GSM531982 reads: 328,239. GSM531984 reads: 423,338. GSM531977 reads: 354,524. GSM531981 reads: 315,838. GSM531985 reads: 2,503,533. GSM531986 reads: 2,543,980. GSM531987 reads: 369,926. GSM531988 reads: 618,689. GSM531974 reads: 328,915.
Pseudogene.org
http://www.pseudogenes.com/DOWNLOADS
This website maintains all the data and tools associated with previous pseudogene publications from Gerstein lab. Publications are organized by species. Please click. To see the reference, or. To see the supporting data or tools. A complete list of pseudogene publications is also available here. Sisu et al. Comparative analysis of pseudogenes across three phyla. PNAS 111(37):13361-6, 2014. Pei et al., The GENCODE pseudogene resource. Genome Biol 13:R51, 2012. BMC Genomics 10:480, 2009. Zheng et al., ...
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Ramblings of a Fedora Linux nerd. Wednesday, June 10, 2015. Fedora Activity Day: Release Engineering 2015. This past weekend a number of members of the Fedora Community who spend time focused on Release Engineering. Came together for a Fedora Activity Day (FAD. To work on some items of interest that will fix current issues being faced as well as work towards solutions for how to handle future challenges such as how to deliver the Fedora.Next. Which is Fedora's implementation of Project Atomic. Will fail ...
Pseudogen: A Funny IID Generator
Pseudogen, Alpha 2. Test site to generate funny Id's. Goal: no php but html5/css3/js/python. For further informations or usage contact: "mail 'at' fabkzo 'dot' com".
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Pseudogene.org
Welcome to Pseudogene.org! This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase. The website is developed and maintained by Yale Gerstein Group.
Pseudogene.org
Welcome to Pseudogene.org! This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase. The website is developed and maintained by Yale Gerstein Group.
Pseudogene.org
Welcome to Pseudogene.org! This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase. The website is developed and maintained by Yale Gerstein Group.
PseudoGenius | Smart, Approachably Smart
Pseudoghetto
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