pyrosetta.org

PyRosetta

PyRosetta is an interactive Python-based interface to the powerful Rosetta molecular modeling suite. It enables users to design their own custom molecular modeling algorithms using Rosetta sampling methods and energy functions. PyRosetta was created at Johns Hopkins University. By Jeffrey J. Gray, Sergey Lyskov, and the PyRosetta Team. Its development is supported by:. Videos from JHU Computational Protein Structure Prediction and Design graduate course. Posted Apr 1, 2015, 1:48 PM. By Jeffrey J. Gray.

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PyRosetta | pyrosetta.org Reviews

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PyRosetta is an interactive Python-based interface to the powerful Rosetta molecular modeling suite. It enables users to design their own custom molecular modeling algorithms using Rosetta sampling methods and energy functions. PyRosetta was created at Johns Hopkins University. By Jeffrey J. Gray, Sergey Lyskov, and the PyRosetta Team. Its development is supported by:. Videos from JHU Computational Protein Structure Prediction and Design graduate course. Posted Apr 1, 2015, 1:48 PM. By Jeffrey J. Gray.

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PyRosetta | pyrosetta.org Reviews

https://pyrosetta.org

PyRosetta is an interactive Python-based interface to the powerful Rosetta molecular modeling suite. It enables users to design their own custom molecular modeling algorithms using Rosetta sampling methods and energy functions. PyRosetta was created at Johns Hopkins University. By Jeffrey J. Gray, Sergey Lyskov, and the PyRosetta Team. Its development is supported by:. Videos from JHU Computational Protein Structure Prediction and Design graduate course. Posted Apr 1, 2015, 1:48 PM. By Jeffrey J. Gray.

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pyrosetta.org

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Downloads - PyRosetta

http://www.pyrosetta.org/dow

PyRosetta is available for Mac (64-bit OS X v10.5 ) and Linux (64-bit Red Hat and 64-bit Ubuntu) platforms in continuous release versions (usually we have a fresh builds available daily). 64-Bit Windows-7 are also available. Additionally, Python (v2.6 or later with shared libraries enabled) might needs to be pre-installed. Please use our forums. For technical support and assistance or if you have any questions or problems with installing PyRosetta, or consult this download tutorial. Loads one dynamic lib...

2

Documentation - PyRosetta

http://www.pyrosetta.org/documentation

Reading and Searching PyRosetta. Finding/Testing Objects and Methods. Developing and Testing New Protocols. Building PyRosetta from source. 1 Deploying PyRosetta build environment. 5 Getters and Setters. 7 Rosetta "Size" and "Real". 8 0 Indexing vs 1 Indexing. 10 Common Method Names. 11 "fullatom" vs. "centroid". A Bit of Python. A Bit of C. 1 The PyRosetta Toolkit. Making a PDB Rosetta-friendly. Hydrogen Bonds and Hydrogen Bond Scoring. Finding/Testing Objects and Methods. Help messages, produced using ".

3

Sitemap - PyRosetta

http://www.pyrosetta.org/system/app/pages/sitemap/hierarchy

4

Licensing PyRosetta - PyRosetta

http://www.pyrosetta.org/home/LicensingPyRosetta

Academic and commercial licensing of PyRosetta is handled with the standard Rosetta license through Rosetta Commons. Licensing is free for academic and non-profit institutions and is available to commerical users for a fee. Please click.

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Report Abuse

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graylab.jhu.edu

Lab Members in Gray Lab

http://graylab.jhu.edu/members.html

Welcome to the Gray Lab. Jeffrey J. Gray, Ph.D. Email: jgray at jhu dot edu. Jason W. Labonte, Ph.D. PhD, Chemistry, Johns Hopkins University. BS, Biochemistry, Grove City College. Julia Koehler Leman, Ph.D. PhD, Chemical and Physical Biology, Vanderbilt University. MS, Physics, Leipzig, Germany. Email: julia.koehler[at]jhu.edu. Brian Weitzner, Ph.D. 2015. PhD, Chemical and Biomolecular Engineering, Johns Hopkins University. BS, Chemical Engineering, Cornell. Email: brian.weitzner at jhu dot edu. BS, Bio...

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Links - ePMV – the embedded Python Molecular Viewer

http://epmv.scripps.edu/documentation/links-1

Install (open-source and free). Pick a 3D Host. How to Revert to a Backup Version. Install (open-source and free). Pick a 3D Host. Interactive Molecular Dynamics IMD. MGL-The Molecular Graphics Laboratory. Molecular visualization tools and media. Protein Movie Generator v2.

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Links - ePMV – the embedded Python Molecular Viewer

http://epmv.grahamj.com/documentation/links-1

Install (open-source and free). Pick a 3D Host. How to Revert to a Backup Version. Install (open-source and free). Pick a 3D Host. Interactive Molecular Dynamics IMD. MGL-The Molecular Graphics Laboratory. Molecular visualization tools and media. Protein Movie Generator v2.

rosettatests.graylab.jhu.edu

Lab Members in Gray Lab

http://rosettatests.graylab.jhu.edu/members.html

Welcome to the Gray Lab. Jeffrey J. Gray, Ph.D. Email: jgray at jhu dot edu. Jason W. Labonte, Ph.D. PhD, Chemistry, Johns Hopkins University. BS, Biochemistry, Grove City College. Julia Koehler Leman, Ph.D. PhD, Chemical and Physical Biology, Vanderbilt University. MS, Physics, Leipzig, Germany. Email: julia.koehler[at]jhu.edu. Brian Weitzner, Ph.D. 2015. PhD, Chemical and Biomolecular Engineering, Johns Hopkins University. BS, Chemical Engineering, Cornell. Email: brian.weitzner at jhu dot edu. BS, Bio...

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pyrosetta.org

PyRosetta

PyRosetta is an interactive Python-based interface to the powerful Rosetta molecular modeling suite. It enables users to design their own custom molecular modeling algorithms using Rosetta sampling methods and energy functions. PyRosetta was created at Johns Hopkins University. By Jeffrey J. Gray, Sergey Lyskov, and the PyRosetta Team. Its development is supported by:. Videos from JHU Computational Protein Structure Prediction and Design graduate course. Posted Apr 1, 2015, 1:48 PM. By Jeffrey J. Gray.

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