r-phylo.org

R-Phylo Wiki

All organisms are linked together by the tree of life. We can use this tree along with trait data, to understand many aspects of biology: does specialization lead to increased speciation? Do body size and brain size coevolve? How have genome sizes changed over time? And more. R has many functions to address such questions. This website has tutorials. On how to do these analyses in R and an overview. Of what is available in R. Tutorials table of contents. Overview of analyses and packages available in R.

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All organisms are linked together by the tree of life. We can use this tree along with trait data, to understand many aspects of biology: does specialization lead to increased speciation? Do body size and brain size coevolve? How have genome sizes changed over time? And more. R has many functions to address such questions. This website has tutorials. On how to do these analyses in R and an overview. Of what is available in R. Tutorials table of contents. Overview of analyses and packages available in R.

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R-Phylo Wiki | r-phylo.org Reviews

https://r-phylo.org

All organisms are linked together by the tree of life. We can use this tree along with trait data, to understand many aspects of biology: does specialization lead to increased speciation? Do body size and brain size coevolve? How have genome sizes changed over time? And more. R has many functions to address such questions. This website has tutorials. On how to do these analyses in R and an overview. Of what is available in R. Tutorials table of contents. Overview of analyses and packages available in R.

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r-phylo.org

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Statistics - Comparative Phylogenetics in R

http://www.r-phylo.org/wiki/Special:Statistics

All pages in the wiki, including talk pages, redirects, etc.). Page edits since Comparative Phylogenetics in R was set up. Average edits per page. Active users (list of members). Users who have performed an action in the last 30 days). Retrieved from " https:/ www.r-phylo.org/wiki/Special:Statistics. About Comparative Phylogenetics in R.

2

HowTo UsefulLinks - Comparative Phylogenetics in R

http://www.r-phylo.org/wiki/HowTo_UsefulLinks

From Comparative Phylogenetics in R. Other useful R resources. Books and other Resources. CRAN list of packages available in R. Rwiki general R information. SMATR R package for running MA and RMA regression maybe useful for allometric type questions. Paradis' homepage for APE (Analysis of Phylogenetics and Evolution). Bodega Applied Phylogenetics Workshop page on comparative methods in R. Felsenstein's list of phylogeny programs. Mesquite: A modular system for evolutionary analysis.

3

User list - Comparative Phylogenetics in R

http://www.r-phylo.org/wiki/Special:ListUsers

Display users starting at:. Show only users with edits. Sort by creation date. Sort in descending order. Created on 8 June 2016 at 06:08). Created on 6 June 2016 at 18:19). Created on 6 June 2016 at 13:10). Retrieved from " https:/ www.r-phylo.org/wiki/Special:ListUsers. About Comparative Phylogenetics in R.

4

HowTo/Table of Contents - Comparative Phylogenetics in R

http://www.r-phylo.org/wiki/HowTo_Table_of_Contents

From Comparative Phylogenetics in R. Redirected from HowTo Table of Contents. Downloading and installing R and packages. Overview of analyses and packages available in R. Basics of using R. Basic tree and data manipulation. Modeling discrete character evolution. Modeling continuous character evolution. PGLS - testing for correlated evolution. Using Mesquite in R. Estimating Phylogenetic Signal - click here. To go to Rich Glor's page on the Bodega Applied Phylogenetics Workshop. With your specific question.

5

Available Packages and Analyses - Comparative Phylogenetics in R

http://www.r-phylo.org/wiki/HowTo/Taskview

Available Packages and Analyses. From Comparative Phylogenetics in R. To see available packages and analyses, please go to the Phylogenetics task view. On CRAN (also shown below). It describes available packages in R, whether or not they are themselves in CRAN. You can install the subset of relevant packages that are in CRAN (especially useful after an upgrade to R has wiped out your packages or you move to a new computer) by doing. Links to these so you can install them yourself.

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muenkemueller.de

Tamara Münkemüller - links

http://www.muenkemueller.de/links.html

Uuml;nkemüller - L. A network of young modellers in ecology - http:/ www.yomos.de. A platform for sharing published data and code - http:/ datadryad.org. A platform for collecting information on tools in ecology and evolution - http:/ www.etoology.net. Theoretical Ecology Blog - Florian Hartig. Beautiful graphics in R - R Graph Gallery. A collection of code and tips and tricks - R-leca. Phylogenetics in R - Wiki. Phylogenetics in R - Blog by Liam Revell.

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Links | Alejandro Ordonez Gloria

https://alejandroordonezgloria.wordpress.com/links

Global Change (Paleo)Ecology and Plant Macroecology. Climate people and environment program (CPEP). Plant taxonomy / systematics. Taxonomic name resolution services. Useful software / data. Climatic data and geographical information. IPCC – Intergovernmental Panel on Climate Change. ISRIC – World Soil Information. Center for Climatic Research. Wisconsin Initiative on Climate Change Impacts (WICCI). Create a free website or blog at WordPress.com.

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Off to a good start: how to generate starting trees for BEAST or *BEAST analyses using R - Justin C. Bagley - Postdoctoral Researcher

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Justin C. Bagley – Postdoctoral Researcher. UnB Dept. de Zoologia. Scientific Presentations: Posters and Talks. Research Advice & Resources. General Ecology – BIOL 3700. Topics in Zoology: Integrative Taxonomy – ZOO 397806. Merging ecology, evolution, and historical biogeography. You are here :. Justin C. Bagley - Postdoctoral Researcher. Off to a good start: how to generate starting trees for BEAST or *BEAST analyses using R. October 10, 2013. BEAST and user trees. Or using resources like this one.

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r-phylo.org

R-Phylo Wiki

All organisms are linked together by the tree of life. We can use this tree along with trait data, to understand many aspects of biology: does specialization lead to increased speciation? Do body size and brain size coevolve? How have genome sizes changed over time? And more. R has many functions to address such questions. This website has tutorials. On how to do these analyses in R and an overview. Of what is available in R. Tutorials table of contents. Overview of analyses and packages available in R.

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