pathway.gramene.org
Rice Metabolic Pathways: RiceCyc Home at Gramene database
http://pathway.gramene.org/ricecyc.html
Rice Metabolic Pathways: RiceCyc Home. RiceCyc ver 3.3. Genome data: O. sativa japonica. It may take 1-2 min to generate this view. Pathway Tools Omics Viewer. Upload the data sets. On gene expression, metabolomics, proteomics experiments to overlay and overview the profile in realtime. It may take more than 3-4 min to generate this view. A free copy of the RiceCyc database in BioCyc. Developed by the SRI International. Developed and curated by. Get a list of pathways added, modified or deleted. At SRI I...
pbtlabdu.net
Useful Links
http://www.pbtlabdu.net/links.htm
Gramene (comparative grass genomics). Department of biochemistry and molecular biology, University of Dhaka. Bangladesh Rice Research Institute. International Rice Research Institute. The Arabidopsis Information Resource Center:. The Institute for Genome Research. Molecular and Functional Diversity of the Maize Genome. European nucleotide sequence database. Dept of Energy Joint Genome Institute. Munich Information Center for Protein Sequences. Genescan Web Server at MIT. Maize genetics and diversity.
ricephylogenomics.ucdavis.edu
Rice Phylogenomics Database
http://ricephylogenomics.ucdavis.edu/description.shtml
Rice Cyt P450 DB. MPSS Small RNA Data. For each family with more than three members, the full protein sequences or domain sequences (Kinase) were aligned using ClustalW Version 2.0 with default options. Then maximum likelihood trees were bulit using PhyML 2.4.4 with JTT model (Kinase, GT, Transporter) or PhyML 3.0 with LG model (GH, TF, Cyt P450). Family assignment for each gene. The chromosome on which each gene is located. Position of 5' end of coding sequence. Position of 3' end of coding sequence.
archive.gramene.org
Gramene: Plant Biochemical Pathway Database and Home to RiceCyc, MaizeCyc, BrachyCyc and SorghumCyc.
http://archive.gramene.org/pathway
Cyanidioschyzon merolae (red algae). Leersia perrieri (chr 3S). Oryza glumaepatula (chr 3S). Oryza granulata (chr 3S). Oryza longistaminata (chr 3S). Oryza meridionalis (chr 3S). Oryza minutaBB (chr 3S). Oryza minutaCC (chr 3S). Oryza nivara (chr 3S). Oryza officinalis (chr 3S). Oryza rufipogon (chr 3S). Oryza rufipogon (FPC map). Oryza sativa Indica Group. Setaria italica (foxtail millet). Triticum aestivum (bread wheat). Aegilops tauschii (wheat D-genome). Triticum urartu (wheat A-genome progenitor).
rice.plantbiology.msu.edu
Rice Genome Annotation Project
http://rice.plantbiology.msu.edu/home_links.shtml
Cereal Genomics Lab Module. Plant GOSlim Assignment of Rice Protiens. Centromeres in the Pseudomolecules. Putative SSRs in the Pseudomolecules. Gene Correlation Search Within a Module. Gene Correlation Search Within an Experiment. Gene Correlation Search Within All Experiments. Plant Repeat FTP Site. Links to other sites related to the Rice Genome Project. MSU Rice Genome Annotation Project. RAP-DB Rice Genome Annotation Project. NIAS Rice Database (Japan). International Rice Research Institute (IRRI).
bis.zju.edu.cn
OsCAS HOME
http://bis.zju.edu.cn/oscas
Please choose your microarray platform:. Input the your query IDs:. Os14874.2.S1 x at
Os.15428.1.S1 at
Os.12767.1.S1 a at
Os.14874.2.S1 x at
Os.9053.1.S1 at
Os.23411.1.S1 at
Os.14563.1.S1 at. Choose the annotation types. Citation: Qingyun Shi, Yijun Meng, Dijun Chen, Fei He, Haibin Gu, Ping Wu, Ming Chen* (2010) OsCAS: a comprehensive web-based annotation platform for rice microarray data. BioChip Journal.
plantbiol.genetics.ac.cn
RIFGP cDNA Microarray
http://plantbiol.genetics.ac.cn/dirlinks.html
Rice Functional Genomics Program. CDNA Microarray Support Files. GenePix - Microarray Image Analysis. Summary for cDNA sequence blast KOME. Summary for cDNA sequence blast TIGR OSA1. Accession numbers for cDNA clones. Layout of cDNA mMicroarray Fabrication. NCBI: National Center for Biotechnology Information. The TIGR Rice Genome Project. TAIR: Arabidopsis Information Resource. The National Center for Gene Research (NCGR). The Beijing Genomics Institute's Rice Information System.
