rna.physics.missouri.edu

Shi-Jie Chen lab

Shi-Jie Chen Research Group. The Vfold Software (version 2.0). Predicting RNA 2D structures from sequence (1M NaCl, room temperature). Predicting RNA 3D structure from 2D structure (1M NaCl, room temperature). Predicting (heat capacity) melting curve (1M NaCl). Database of RNA 3D motifs. A tool to extract RNA motifs for a given 3D structure. Interpretation of your results. This web server is under continuous development. If you have questions or comments, please contact us.

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Shi-Jie Chen lab | rna.physics.missouri.edu Reviews

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Shi-Jie Chen Research Group. The Vfold Software (version 2.0). Predicting RNA 2D structures from sequence (1M NaCl, room temperature). Predicting RNA 3D structure from 2D structure (1M NaCl, room temperature). Predicting (heat capacity) melting curve (1M NaCl). Database of RNA 3D motifs. A tool to extract RNA motifs for a given 3D structure. Interpretation of your results. This web server is under continuous development. If you have questions or comments, please contact us.

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2 publications

3 members

4 software

5 vfold server

6 tbi server

7 vfold2d

8 vfold3d

9 vfoldthermal

10 vfoldmotif

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Shi-Jie Chen lab | rna.physics.missouri.edu Reviews

https://rna.physics.missouri.edu

Shi-Jie Chen Research Group. The Vfold Software (version 2.0). Predicting RNA 2D structures from sequence (1M NaCl, room temperature). Predicting RNA 3D structure from 2D structure (1M NaCl, room temperature). Predicting (heat capacity) melting curve (1M NaCl). Database of RNA 3D motifs. A tool to extract RNA motifs for a given 3D structure. Interpretation of your results. This web server is under continuous development. If you have questions or comments, please contact us.

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rna.physics.missouri.edu

1

Vfold2D

http://rna.physics.missouri.edu/BP_index.html

You are visiting our old website which has been discontinued. Please visit our new server at http:/ rna.physics.missouri.edu/vfold2D/. Vfold2D (version 2.0): Predicting RNA 2D structures. To avoid long computational time, we restrict the sequence length. 2) Energy paramters for base stacks, including mismatched base stacks:. From the Turner parameters (04 version). From the MFOLD (2.3 version). 3) Enter sequence (A,a,U,u,G,g,C,c):. 4) Job name (alphanumeric characters only):.

2

TBI model

http://rna.physics.missouri.edu/tbi_index.html

Our servers are temporarily down while we are moving the servers to a new computer system. We are sorry for the inconvenience. Tightly Bound Ion Model (TBI): Predicting ion effects in RNA folding. TBI predicts the electrostatic free energy, the different free energy components, the average binding fraction of ions, and the most probable ion binding modes for a given RNA structure (provided in the PDB format) in a salt solution of given ion concentrations. Cannot be nonzero simultaneously.

3

Shi-Jie Chen lab

http://rna.physics.missouri.edu/index.html

Shi-Jie Chen Research Group. The Vfold Software (version 2.0). Predicting RNA 2D structures from sequence (1M NaCl). Predicting RNA 3D structure from 2D structure (1M NaCl, room temperature). Predicting (heat capacity) melting curve (1M NaCl). Interpretation of your results. This web server is under continuous development. If you have questions or comments, please contact us.

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Shi-Jie Chen lab

Shi-Jie Chen Research Group. The Vfold Software (version 2.0). Predicting RNA 2D structures from sequence (1M NaCl, room temperature). Predicting RNA 3D structure from 2D structure (1M NaCl, room temperature). Predicting (heat capacity) melting curve (1M NaCl). Database of RNA 3D motifs. A tool to extract RNA motifs for a given 3D structure. Interpretation of your results. This web server is under continuous development. If you have questions or comments, please contact us.

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