Protein-DNA recognition, Gene regulation, Binding specificity, Transcription factors, Nucleosome, Hox proteins, Tumor suppressor p53, DNA shape, RNA, Electrostatics, Structure prediction, Molecular simulations
http://rohslab.cmb.usc.edu/
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Welcome to the Rohs Lab | rohslab.cmb.usc.edu Reviews
https://rohslab.cmb.usc.edu
Protein-DNA recognition, Gene regulation, Binding specificity, Transcription factors, Nucleosome, Hox proteins, Tumor suppressor p53, DNA shape, RNA, Electrostatics, Structure prediction, Molecular simulations
rohslab.cmb.usc.edu
Rohs Lab - Computational Structural Biology
http://rohslab.cmb.usc.edu/Gallery/Gallery.php
Photo credits: Tianyin Zhou, Jie Gu, Iris Dror. Uh oh, embedded frames are not supported by your browser! October 17, 2014. Paper on genome browser database. For DNA shape annotation published in NAR. Congratulations, Tsu-Pei! October 14, 2014. Review article on DNA methylation. And its effect on protein-DNA binding published in Brief Funct. Genomics. September 26, 2014. Tianyin successfully defends his Ph.D thesis. Congratulations and good luck at google! September 4, 2014. August 14, 2014. May 8, 2014.
Welcome to the Rohs Lab
http://rohslab.cmb.usc.edu/People.html
Remo Rohs, Ph.D. Professor of Biological Sciences, Chemistry, Physics and Astronomy, and Computer Science. Vice Chair of Biological Sciences. Head of Computational Biology and Bioinformatics. Email: rohs AT usc.edu. Email: tsupeich AT usc.edu. Ana Carolina Dantas Machado. Email: dantasma AT usc.edu. Email: jinsenli AT usc.edu. Joint with Prof. Daniel Lidar. Email: liry AT usc.edu. Email: satyanar AT usc.edu. Email: sagendor AT usc.edu. Email: xiaofei AT usc.edu. Email: bxin At usc.edu. Iris Dror, Ph.D.
Welcome to the Rohs Lab
http://rohslab.cmb.usc.edu/tools.html
Chiu et al. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding. 32, 1211-1213 (2016). Link to DNAshapeR software package link. Chiu et al. GBshape: a genome browser database for DNA shape annotations. 43, D103-109 (2015). Link to GBshape database. Yang et al. TFBSshape: a motif database for DNA shape features of transcription factor binding sites. 42, D148-155 (2014). Link to TFBSshape database. We developed a new method for predicting DNA shape in a high-throughput manner...
Rohs Lab - Computational Structural Biology
http://rohslab.cmb.usc.edu/Archive.html
Our recent Dror et al. BioEssays. Paper is highlighted in the issue of the journal with a commentary Transcription factor binding: More than just motif recognition. Our recent Abe et al. Cell. Paper is highlighted by a commentary Nature Reviews Genetics Shaping up transcription factor binding. And a USC press release Patterns and Shapes. Our recent Zhou et al. PNAS. Paper is highlighted by a commentary in PNAS Shapely DNA attracts the right partner. And a USC press release Patterns and Shapes. Commentary...
Welcome to the Rohs Lab
http://rohslab.cmb.usc.edu/index.html
Welcome to the Rohs Lab. The main focus of our Computational and Structural Biology. Research group is the integration of two fields of research: genomics and structural biology. Our primary goal is to reveal yet unknown molecular mechanisms underlying gene regulation using bioinformatics analyses of high-throughput sequencing and DNA methylation data of whole genomes, integrated with experimental molecular biology approaches. 32, 1211-1213 (2016). 25, 1268-1280 (2015). HT-SELEX binding assays and. GBsha...
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Department of Chemistry
http://chem.usc.edu/faculty/alpha.html
Research Centers and Programs. Apply for Grad School. Intranet (USC domain only). Home : people : faculty. Alexander V. Benderskii. Stephen E. Bradforth. Richard L. Brutchey. Jahan M. Dawlaty. James F. Haw. Thieo E. Hogen-Esch. Kyung W. Jung. Daniel A. Lidar. Smaranda C. Marinescu. Charles E. McKenna. Brent C. Melot. George A. Olah. Nicos A. Petasis. G K Surya Prakash. Matthew R. Pratt. Peter Z. Qin. Richard W. Roberts. Lawrence A. Singer. Barry C. Thompson. Mark E. Thompson. Travis J. Williams. Chemistr...
Affiliations
http://themannlab.org/affiliations.php
Department of Biochemistry and Molecular Biophysics. Motor Neuron Center, Columbia University. Magnet.c2b2.columbia.edu/. Department of Systems Biology, Columbia University. Zuckerman Mind Brain Behavior Institute. Barry Honig, Columbia University. Wikic2b2.columbia.edu/honiglab public/index.php/Main Page. Harmen Bussemaker, Columbia University. Bussemaker.bio.columbia.edu/lab/. Remo Rohs, University of Southern California. Rohslab.cmb.usc.edu/. Kevin White, University of Chicago. Utpal Banerjee, UCLA.
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Royal Oak Dondero High School Jan., 1956. Friday, January 21, 2011. Florida Get-Together in St. Petersburg. Happy New Year, Everyone. It's time again for our annual get-together in Florida. Chuck Charmatz has graciously offered to host the event again this year featuring his famous deep-fried turkey. As we have done in previous years, bring a dish to pass. Chuck will provide the drinks and the turkey. Date: Friday, March 4, 2011. Place: 9180 130th St. N., Seminole, Fl 38776. Please RSVP to both of us:.
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Welcome to the Rohs Lab
Welcome to the Rohs Lab. The main focus of our Computational Structural Biology. Research group is the integration of two fields of research: genomics and structural biology. Our primary goal is to reveal yet unknown molecular mechanisms underlying gene regulation using bioinformatics analyses of high-throughput sequencing and DNA methylation data of whole genomes. Dror et al. A widespread role of the motif environment on transcription factor binding across diverse protein families. 161, 307-318 (2015).
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